==37038== Memcheck, a memory error detector ==37038== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==37038== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==37038== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==37038== Parent PID: 24322 ==37038== ==37038== ==37038== FILE DESCRIPTORS: 9 open (3 std) at exit. ==37038== Open file descriptor 12: ==37038== at 0xF9A50FD: pipe (pipe.c:29) ==37038== by 0x1973207D: ??? ==37038== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==37038== by 0x1029D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37038== by 0x10236D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37038== by 0x103E2D38: PetscInitialize (pinit.c:924) ==37038== by 0xF17AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==37038== by 0xF17AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==37038== by 0x1D7694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==37038== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==37038== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==37038== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==37038== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==37038== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==37038== ==37038== Open file descriptor 8: /dev/shm/open_mpi.0000 ==37038== at 0xF9A9A9C: __open_nocancel (open64_nocancel.c:39) ==37038== by 0xF92DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==37038== by 0xF1B2822: ??? ==37038== by 0xF1B296F: ??? ==37038== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37038== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37038== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37038== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==37038== by 0x1029D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37038== by 0x10236D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37038== by 0x103E2D38: PetscInitialize (pinit.c:924) ==37038== by 0xF17AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==37038== by 0xF17AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==37038== by 0x1D7694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==37038== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==37038== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==37038== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==37038== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==37038== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==37038== ==37038== Open file descriptor 145: ==37038== ==37038== ==37038== Open file descriptor 142: ==37038== ==37038== ==37038== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==37038== ==37038== ==37038== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==37038== ==37038== ==37038== ==37038== HEAP SUMMARY: ==37038== in use at exit: 35,158 bytes in 287 blocks ==37038== total heap usage: 11,666,344 allocs, 11,666,057 frees, 877,102,043 bytes allocated ==37038== ==37038== LEAK SUMMARY: ==37038== definitely lost: 0 bytes in 0 blocks ==37038== indirectly lost: 0 bytes in 0 blocks ==37038== possibly lost: 0 bytes in 0 blocks ==37038== still reachable: 72 bytes in 4 blocks ==37038== suppressed: 35,086 bytes in 283 blocks ==37038== Reachable blocks (those to which a pointer was found) are not shown. ==37038== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==37038== ==37038== For lists of detected and suppressed errors, rerun with: -s ==37038== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)