==40277== Memcheck, a memory error detector ==40277== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40277== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40277== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40277== Parent PID: 24322 ==40277== ==40277== ==40277== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40277== Open file descriptor 12: ==40277== at 0x10D310FD: pipe (pipe.c:29) ==40277== by 0x1973007D: ??? ==40277== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40277== by 0x1097E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40277== by 0x10917D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40277== by 0xF60ED38: PetscInitialize (pinit.c:924) ==40277== by 0xF17AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40277== by 0xF17AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40277== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40277== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40277== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40277== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40277== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40277== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40277== ==40277== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40277== at 0x10D35A9C: __open_nocancel (open64_nocancel.c:39) ==40277== by 0x10CB9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40277== by 0xF1B2822: ??? ==40277== by 0xF1B296F: ??? ==40277== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40277== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40277== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40277== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40277== by 0x1097E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40277== by 0x10917D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40277== by 0xF60ED38: PetscInitialize (pinit.c:924) ==40277== by 0xF17AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40277== by 0xF17AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40277== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40277== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40277== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40277== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40277== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40277== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40277== ==40277== Open file descriptor 145: ==40277== ==40277== ==40277== Open file descriptor 142: ==40277== ==40277== ==40277== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==40277== ==40277== ==40277== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40277== ==40277== ==40277== ==40277== HEAP SUMMARY: ==40277== in use at exit: 35,142 bytes in 286 blocks ==40277== total heap usage: 3,485,266 allocs, 3,484,980 frees, 939,085,051 bytes allocated ==40277== ==40277== LEAK SUMMARY: ==40277== definitely lost: 0 bytes in 0 blocks ==40277== indirectly lost: 0 bytes in 0 blocks ==40277== possibly lost: 0 bytes in 0 blocks ==40277== still reachable: 56 bytes in 3 blocks ==40277== suppressed: 35,086 bytes in 283 blocks ==40277== Reachable blocks (those to which a pointer was found) are not shown. ==40277== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40277== ==40277== For lists of detected and suppressed errors, rerun with: -s ==40277== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)