==40468== Memcheck, a memory error detector ==40468== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40468== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40468== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40468== Parent PID: 24234 ==40468== ==40468== ==40468== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40468== Open file descriptor 12: ==40468== at 0x109CA0FD: pipe (pipe.c:29) ==40468== by 0x1B3F007D: ??? ==40468== by 0x1553F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40468== by 0x102D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40468== by 0x1026BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40468== by 0x6277D38: PetscInitialize (pinit.c:924) ==40468== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40468== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40468== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40468== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40468== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40468== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40468== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40468== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40468== ==40468== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40468== at 0x109CEA9C: __open_nocancel (open64_nocancel.c:39) ==40468== by 0x10952BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40468== by 0x6122822: ??? ==40468== by 0x612296F: ??? ==40468== by 0x155E46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40468== by 0x155E4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40468== by 0x1559A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40468== by 0x1553F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40468== by 0x102D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40468== by 0x1026BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40468== by 0x6277D38: PetscInitialize (pinit.c:924) ==40468== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40468== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40468== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40468== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40468== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40468== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40468== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40468== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40468== ==40468== Open file descriptor 145: ==40468== ==40468== ==40468== Open file descriptor 142: ==40468== ==40468== ==40468== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40468== ==40468== ==40468== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40468== ==40468== ==40468== ==40468== HEAP SUMMARY: ==40468== in use at exit: 35,279 bytes in 291 blocks ==40468== total heap usage: 738,528 allocs, 738,237 frees, 41,694,558 bytes allocated ==40468== ==40468== LEAK SUMMARY: ==40468== definitely lost: 0 bytes in 0 blocks ==40468== indirectly lost: 0 bytes in 0 blocks ==40468== possibly lost: 0 bytes in 0 blocks ==40468== still reachable: 120 bytes in 4 blocks ==40468== suppressed: 35,159 bytes in 287 blocks ==40468== Reachable blocks (those to which a pointer was found) are not shown. ==40468== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40468== ==40468== For lists of detected and suppressed errors, rerun with: -s ==40468== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)