==40863== Memcheck, a memory error detector ==40863== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40863== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40863== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40863== Parent PID: 24076 ==40863== ==40863== ==40863== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40863== Open file descriptor 12: ==40863== at 0x125EF0FD: pipe (pipe.c:29) ==40863== by 0x1B3F007D: ??? ==40863== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40863== by 0x11EF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40863== by 0x11E90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40863== by 0x6210D38: PetscInitialize (pinit.c:924) ==40863== by 0x11DB6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40863== by 0x11DB6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40863== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40863== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40863== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40863== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40863== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40863== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40863== ==40863== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40863== at 0x125F3A9C: __open_nocancel (open64_nocancel.c:39) ==40863== by 0x12577BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40863== by 0x11DF4822: ??? ==40863== by 0x11DF496F: ??? ==40863== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40863== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40863== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40863== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40863== by 0x11EF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40863== by 0x11E90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40863== by 0x6210D38: PetscInitialize (pinit.c:924) ==40863== by 0x11DB6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40863== by 0x11DB6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40863== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40863== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40863== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40863== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40863== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40863== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40863== ==40863== Open file descriptor 145: ==40863== ==40863== ==40863== Open file descriptor 142: ==40863== ==40863== ==40863== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==40863== ==40863== ==40863== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40863== ==40863== ==40863== ==40863== HEAP SUMMARY: ==40863== in use at exit: 35,215 bytes in 290 blocks ==40863== total heap usage: 1,739,487 allocs, 1,739,197 frees, 184,474,426 bytes allocated ==40863== ==40863== LEAK SUMMARY: ==40863== definitely lost: 0 bytes in 0 blocks ==40863== indirectly lost: 0 bytes in 0 blocks ==40863== possibly lost: 0 bytes in 0 blocks ==40863== still reachable: 56 bytes in 3 blocks ==40863== suppressed: 35,159 bytes in 287 blocks ==40863== Reachable blocks (those to which a pointer was found) are not shown. ==40863== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40863== ==40863== For lists of detected and suppressed errors, rerun with: -s ==40863== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)