==39966== Memcheck, a memory error detector ==39966== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39966== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39966== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info ==39966== Parent PID: 23996 ==39966== ==39966== ==39966== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39966== Open file descriptor 12: ==39966== at 0xF4D30FD: pipe (pipe.c:29) ==39966== by 0x1B3F407D: ??? ==39966== by 0x144294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39966== by 0x11B5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39966== by 0x11AF6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39966== by 0x11CA2D38: PetscInitialize (pinit.c:924) ==39966== by 0xEDD3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39966== by 0xEDD3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39966== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39966== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39966== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39966== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39966== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39966== by 0x118975: main (TestCellForCrypt.cpp:18) ==39966== ==39966== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39966== at 0xF4D7A9C: __open_nocancel (open64_nocancel.c:39) ==39966== by 0xF45BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39966== by 0xEE11822: ??? ==39966== by 0xEE1196F: ??? ==39966== by 0x144CE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39966== by 0x144CE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39966== by 0x14484922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39966== by 0x144292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39966== by 0x11B5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39966== by 0x11AF6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39966== by 0x11CA2D38: PetscInitialize (pinit.c:924) ==39966== by 0xEDD3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39966== by 0xEDD3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39966== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39966== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39966== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39966== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39966== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39966== by 0x118975: main (TestCellForCrypt.cpp:18) ==39966== ==39966== Open file descriptor 145: ==39966== ==39966== ==39966== Open file descriptor 142: ==39966== ==39966== ==39966== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt ==39966== ==39966== ==39966== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39966== ==39966== ==39966== ==39966== HEAP SUMMARY: ==39966== in use at exit: 36,813 bytes in 312 blocks ==39966== total heap usage: 39,517 allocs, 39,205 frees, 8,150,282 bytes allocated ==39966== ==39966== LEAK SUMMARY: ==39966== definitely lost: 0 bytes in 0 blocks ==39966== indirectly lost: 0 bytes in 0 blocks ==39966== possibly lost: 0 bytes in 0 blocks ==39966== still reachable: 184 bytes in 4 blocks ==39966== suppressed: 36,629 bytes in 308 blocks ==39966== Reachable blocks (those to which a pointer was found) are not shown. ==39966== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39966== ==39966== For lists of detected and suppressed errors, rerun with: -s ==39966== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)