==39988== Memcheck, a memory error detector ==39988== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39988== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39988== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==39988== Parent PID: 23996 ==39988== ==39988== ==39988== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39988== Open file descriptor 12: ==39988== at 0x10C0E0FD: pipe (pipe.c:29) ==39988== by 0x1B3F207D: ??? ==39988== by 0x155924CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39988== by 0x10516418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39988== by 0x104AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39988== by 0x6277D38: PetscInitialize (pinit.c:924) ==39988== by 0x103F8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39988== by 0x103F8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39988== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39988== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39988== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39988== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39988== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39988== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==39988== ==39988== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39988== at 0x10C12A9C: __open_nocancel (open64_nocancel.c:39) ==39988== by 0x10B96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39988== by 0x6122822: ??? ==39988== by 0x612296F: ??? ==39988== by 0x156376DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39988== by 0x15637938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39988== by 0x155ED922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39988== by 0x155922DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39988== by 0x10516418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39988== by 0x104AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39988== by 0x6277D38: PetscInitialize (pinit.c:924) ==39988== by 0x103F8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39988== by 0x103F8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39988== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39988== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39988== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39988== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39988== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39988== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==39988== ==39988== Open file descriptor 145: ==39988== ==39988== ==39988== Open file descriptor 142: ==39988== ==39988== ==39988== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==39988== ==39988== ==39988== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39988== ==39988== ==39988== ==39988== HEAP SUMMARY: ==39988== in use at exit: 36,749 bytes in 312 blocks ==39988== total heap usage: 845,763 allocs, 845,451 frees, 129,861,751 bytes allocated ==39988== ==39988== LEAK SUMMARY: ==39988== definitely lost: 0 bytes in 0 blocks ==39988== indirectly lost: 0 bytes in 0 blocks ==39988== possibly lost: 0 bytes in 0 blocks ==39988== still reachable: 120 bytes in 4 blocks ==39988== suppressed: 36,629 bytes in 308 blocks ==39988== Reachable blocks (those to which a pointer was found) are not shown. ==39988== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39988== ==39988== For lists of detected and suppressed errors, rerun with: -s ==39988== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)