==39786== Memcheck, a memory error detector ==39786== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39786== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39786== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39786== Parent PID: 23996 ==39786== ==39786== ==39786== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39786== Open file descriptor 12: ==39786== at 0x10D310FD: pipe (pipe.c:29) ==39786== by 0x1973107D: ??? ==39786== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39786== by 0x1097E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39786== by 0x10917D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39786== by 0xF60ED38: PetscInitialize (pinit.c:924) ==39786== by 0xF17AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39786== by 0xF17AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39786== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39786== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39786== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39786== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39786== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39786== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==39786== ==39786== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39786== at 0x10D35A9C: __open_nocancel (open64_nocancel.c:39) ==39786== by 0x10CB9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39786== by 0xF1B8822: ??? ==39786== by 0xF1B896F: ??? ==39786== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39786== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39786== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39786== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39786== by 0x1097E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39786== by 0x10917D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39786== by 0xF60ED38: PetscInitialize (pinit.c:924) ==39786== by 0xF17AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39786== by 0xF17AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39786== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39786== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39786== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39786== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39786== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39786== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==39786== ==39786== Open file descriptor 145: ==39786== ==39786== ==39786== Open file descriptor 142: ==39786== ==39786== ==39786== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==39786== ==39786== ==39786== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39786== ==39786== ==39786== ==39786== HEAP SUMMARY: ==39786== in use at exit: 36,596 bytes in 307 blocks ==39786== total heap usage: 3,485,226 allocs, 3,484,919 frees, 939,122,564 bytes allocated ==39786== ==39786== LEAK SUMMARY: ==39786== definitely lost: 0 bytes in 0 blocks ==39786== indirectly lost: 0 bytes in 0 blocks ==39786== possibly lost: 0 bytes in 0 blocks ==39786== still reachable: 56 bytes in 3 blocks ==39786== suppressed: 36,540 bytes in 304 blocks ==39786== Reachable blocks (those to which a pointer was found) are not shown. ==39786== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39786== ==39786== For lists of detected and suppressed errors, rerun with: -s ==39786== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)