==25967== Memcheck, a memory error detector ==25967== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25967== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25967== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==25967== Parent PID: 24084 ==25967== ==25967== ==25967== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25967== Open file descriptor 12: ==25967== at 0xDBC50FD: pipe (pipe.c:29) ==25967== by 0x1973107D: ??? ==25967== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25967== by 0xFE6F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25967== by 0xFE08D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25967== by 0xFFB6D38: PetscInitialize (pinit.c:924) ==25967== by 0xD7C8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25967== by 0xD7C8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25967== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25967== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25967== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25967== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25967== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25967== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25967== ==25967== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25967== at 0xDBC9A9C: __open_nocancel (open64_nocancel.c:39) ==25967== by 0xDB4DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25967== by 0xD806822: ??? ==25967== by 0xD80696F: ??? ==25967== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25967== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25967== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25967== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25967== by 0xFE6F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25967== by 0xFE08D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25967== by 0xFFB6D38: PetscInitialize (pinit.c:924) ==25967== by 0xD7C8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25967== by 0xD7C8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25967== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25967== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25967== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25967== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25967== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25967== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25967== ==25967== Open file descriptor 145: ==25967== ==25967== ==25967== Open file descriptor 142: ==25967== ==25967== ==25967== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==25967== ==25967== ==25967== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25967== ==25967== ==25967== ==25967== HEAP SUMMARY: ==25967== in use at exit: 35,167 bytes in 289 blocks ==25967== total heap usage: 42,205 allocs, 41,916 frees, 8,229,673 bytes allocated ==25967== ==25967== LEAK SUMMARY: ==25967== definitely lost: 0 bytes in 0 blocks ==25967== indirectly lost: 0 bytes in 0 blocks ==25967== possibly lost: 0 bytes in 0 blocks ==25967== still reachable: 24 bytes in 2 blocks ==25967== suppressed: 35,143 bytes in 287 blocks ==25967== Reachable blocks (those to which a pointer was found) are not shown. ==25967== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25967== ==25967== For lists of detected and suppressed errors, rerun with: -s ==25967== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)