==44203== Memcheck, a memory error detector ==44203== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==44203== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==44203== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==44203== Parent PID: 24124 ==44203== ==44203== ==44203== FILE DESCRIPTORS: 9 open (3 std) at exit. ==44203== Open file descriptor 12: ==44203== at 0xA7FB0FD: pipe (pipe.c:29) ==44203== by 0x1435F07D: ??? ==44203== by 0xD9AB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44203== by 0xABC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44203== by 0xAB60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44203== by 0xB0A4D38: PetscInitialize (pinit.c:924) ==44203== by 0xA0DFE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44203== by 0xA0DFEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44203== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44203== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44203== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44203== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44203== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44203== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==44203== ==44203== Open file descriptor 8: /dev/shm/open_mpi.0000 ==44203== at 0xA7FFA9C: __open_nocancel (open64_nocancel.c:39) ==44203== by 0xA783BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==44203== by 0xA11D822: ??? ==44203== by 0xA11D96F: ??? ==44203== by 0xDA506DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44203== by 0xDA50938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44203== by 0xDA06922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44203== by 0xD9AB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44203== by 0xABC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44203== by 0xAB60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44203== by 0xB0A4D38: PetscInitialize (pinit.c:924) ==44203== by 0xA0DFE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44203== by 0xA0DFEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44203== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44203== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44203== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44203== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44203== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44203== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==44203== ==44203== Open file descriptor 145: ==44203== ==44203== ==44203== Open file descriptor 142: ==44203== ==44203== ==44203== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==44203== ==44203== ==44203== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==44203== ==44203== ==44203== ==44203== HEAP SUMMARY: ==44203== in use at exit: 35,590 bytes in 295 blocks ==44203== total heap usage: 818,124 allocs, 817,829 frees, 111,936,568 bytes allocated ==44203== ==44203== LEAK SUMMARY: ==44203== definitely lost: 0 bytes in 0 blocks ==44203== indirectly lost: 0 bytes in 0 blocks ==44203== possibly lost: 0 bytes in 0 blocks ==44203== still reachable: 24 bytes in 2 blocks ==44203== suppressed: 35,566 bytes in 293 blocks ==44203== Reachable blocks (those to which a pointer was found) are not shown. ==44203== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==44203== ==44203== For lists of detected and suppressed errors, rerun with: -s ==44203== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 31)