==40840== Memcheck, a memory error detector ==40840== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40840== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40840== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40840== Parent PID: 24103 ==40840== ==40840== ==40840== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40840== Open file descriptor 12: ==40840== at 0x126E30FD: pipe (pipe.c:29) ==40840== by 0x1B4E307D: ??? ==40840== by 0x166724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40840== by 0x11FEB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40840== by 0x11F84D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40840== by 0x6210D38: PetscInitialize (pinit.c:924) ==40840== by 0x11EAAE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40840== by 0x11EAAEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40840== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40840== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40840== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40840== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40840== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40840== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40840== ==40840== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40840== at 0x126E7A9C: __open_nocancel (open64_nocancel.c:39) ==40840== by 0x1266BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40840== by 0x11EE8822: ??? ==40840== by 0x11EE896F: ??? ==40840== by 0x167176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40840== by 0x16717938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40840== by 0x166CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40840== by 0x166722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40840== by 0x11FEB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40840== by 0x11F84D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40840== by 0x6210D38: PetscInitialize (pinit.c:924) ==40840== by 0x11EAAE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40840== by 0x11EAAEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40840== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40840== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40840== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40840== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40840== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40840== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40840== ==40840== Open file descriptor 145: ==40840== ==40840== ==40840== Open file descriptor 142: ==40840== ==40840== ==40840== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==40840== ==40840== ==40840== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40840== ==40840== ==40840== ==40840== HEAP SUMMARY: ==40840== in use at exit: 35,215 bytes in 290 blocks ==40840== total heap usage: 1,739,531 allocs, 1,739,241 frees, 184,478,224 bytes allocated ==40840== ==40840== LEAK SUMMARY: ==40840== definitely lost: 0 bytes in 0 blocks ==40840== indirectly lost: 0 bytes in 0 blocks ==40840== possibly lost: 0 bytes in 0 blocks ==40840== still reachable: 56 bytes in 3 blocks ==40840== suppressed: 35,159 bytes in 287 blocks ==40840== Reachable blocks (those to which a pointer was found) are not shown. ==40840== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40840== ==40840== For lists of detected and suppressed errors, rerun with: -s ==40840== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)