==40879== Memcheck, a memory error detector ==40879== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40879== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40879== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40879== Parent PID: 24103 ==40879== ==40879== ==40879== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40879== Open file descriptor 12: ==40879== at 0x126E30FD: pipe (pipe.c:29) ==40879== by 0x1B4E307D: ??? ==40879== by 0x166724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40879== by 0x11FEB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40879== by 0x11F84D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40879== by 0x6210D38: PetscInitialize (pinit.c:924) ==40879== by 0x11EAAE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40879== by 0x11EAAEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40879== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40879== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40879== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40879== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40879== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40879== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40879== ==40879== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40879== at 0x126E7A9C: __open_nocancel (open64_nocancel.c:39) ==40879== by 0x1266BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40879== by 0x11EE8822: ??? ==40879== by 0x11EE896F: ??? ==40879== by 0x167176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40879== by 0x16717938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40879== by 0x166CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40879== by 0x166722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40879== by 0x11FEB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40879== by 0x11F84D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40879== by 0x6210D38: PetscInitialize (pinit.c:924) ==40879== by 0x11EAAE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40879== by 0x11EAAEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40879== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40879== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40879== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40879== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40879== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40879== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40879== ==40879== Open file descriptor 145: ==40879== ==40879== ==40879== Open file descriptor 142: ==40879== ==40879== ==40879== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==40879== ==40879== ==40879== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40879== ==40879== ==40879== ==40879== HEAP SUMMARY: ==40879== in use at exit: 35,295 bytes in 291 blocks ==40879== total heap usage: 1,601,513 allocs, 1,601,222 frees, 127,285,914 bytes allocated ==40879== ==40879== LEAK SUMMARY: ==40879== definitely lost: 0 bytes in 0 blocks ==40879== indirectly lost: 0 bytes in 0 blocks ==40879== possibly lost: 0 bytes in 0 blocks ==40879== still reachable: 136 bytes in 4 blocks ==40879== suppressed: 35,159 bytes in 287 blocks ==40879== Reachable blocks (those to which a pointer was found) are not shown. ==40879== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40879== ==40879== For lists of detected and suppressed errors, rerun with: -s ==40879== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)