==25909== Memcheck, a memory error detector ==25909== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25909== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25909== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==25909== Parent PID: 23896 ==25909== ==25909== ==25909== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25909== Open file descriptor 12: ==25909== at 0xF8780FD: pipe (pipe.c:29) ==25909== by 0x1973107D: ??? ==25909== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25909== by 0x10170418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25909== by 0x10109D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25909== by 0x102F9D38: PetscInitialize (pinit.c:924) ==25909== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25909== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25909== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25909== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25909== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25909== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25909== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25909== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==25909== ==25909== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25909== at 0xF87CA9C: __open_nocancel (open64_nocancel.c:39) ==25909== by 0xF800BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25909== by 0xF1B0822: ??? ==25909== by 0xF1B096F: ??? ==25909== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25909== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25909== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25909== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25909== by 0x10170418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25909== by 0x10109D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25909== by 0x102F9D38: PetscInitialize (pinit.c:924) ==25909== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25909== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25909== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25909== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25909== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25909== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25909== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25909== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==25909== ==25909== Open file descriptor 145: ==25909== ==25909== ==25909== Open file descriptor 142: ==25909== ==25909== ==25909== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==25909== ==25909== ==25909== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25909== ==25909== ==25909== ==25909== HEAP SUMMARY: ==25909== in use at exit: 36,685 bytes in 311 blocks ==25909== total heap usage: 1,108,282 allocs, 1,107,971 frees, 84,879,174 bytes allocated ==25909== ==25909== LEAK SUMMARY: ==25909== definitely lost: 0 bytes in 0 blocks ==25909== indirectly lost: 0 bytes in 0 blocks ==25909== possibly lost: 0 bytes in 0 blocks ==25909== still reachable: 56 bytes in 3 blocks ==25909== suppressed: 36,629 bytes in 308 blocks ==25909== Reachable blocks (those to which a pointer was found) are not shown. ==25909== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25909== ==25909== For lists of detected and suppressed errors, rerun with: -s ==25909== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)