==26178== Memcheck, a memory error detector ==26178== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26178== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26178== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==26178== Parent PID: 23896 ==26178== ==26178== ==26178== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26178== Open file descriptor 12: ==26178== at 0x10E580FD: pipe (pipe.c:29) ==26178== by 0x1972F07D: ??? ==26178== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26178== by 0x109BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26178== by 0x10957D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26178== by 0xF64ED38: PetscInitialize (pinit.c:924) ==26178== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26178== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26178== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26178== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26178== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26178== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26178== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26178== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==26178== ==26178== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26178== at 0x10E5CA9C: __open_nocancel (open64_nocancel.c:39) ==26178== by 0x10DE0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26178== by 0xF1B0822: ??? ==26178== by 0xF1B096F: ??? ==26178== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26178== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26178== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26178== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26178== by 0x109BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26178== by 0x10957D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26178== by 0xF64ED38: PetscInitialize (pinit.c:924) ==26178== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26178== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26178== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26178== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26178== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26178== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26178== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26178== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==26178== ==26178== Open file descriptor 145: ==26178== ==26178== ==26178== Open file descriptor 142: ==26178== ==26178== ==26178== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==26178== ==26178== ==26178== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26178== ==26178== ==26178== ==26178== HEAP SUMMARY: ==26178== in use at exit: 36,685 bytes in 311 blocks ==26178== total heap usage: 859,017 allocs, 858,706 frees, 173,631,764 bytes allocated ==26178== ==26178== LEAK SUMMARY: ==26178== definitely lost: 0 bytes in 0 blocks ==26178== indirectly lost: 0 bytes in 0 blocks ==26178== possibly lost: 0 bytes in 0 blocks ==26178== still reachable: 56 bytes in 3 blocks ==26178== suppressed: 36,629 bytes in 308 blocks ==26178== Reachable blocks (those to which a pointer was found) are not shown. ==26178== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26178== ==26178== For lists of detected and suppressed errors, rerun with: -s ==26178== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)