==39841== Memcheck, a memory error detector ==39841== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39841== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39841== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==39841== Parent PID: 23896 ==39841== ==39841== ==39841== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39841== Open file descriptor 12: ==39841== at 0x109CA0FD: pipe (pipe.c:29) ==39841== by 0x1B3F007D: ??? ==39841== by 0x1553F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39841== by 0x102D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39841== by 0x1026BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39841== by 0x6277D38: PetscInitialize (pinit.c:924) ==39841== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39841== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39841== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39841== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39841== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39841== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39841== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39841== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==39841== ==39841== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39841== at 0x109CEA9C: __open_nocancel (open64_nocancel.c:39) ==39841== by 0x10952BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39841== by 0x611C822: ??? ==39841== by 0x611C96F: ??? ==39841== by 0x155E46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39841== by 0x155E4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39841== by 0x1559A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39841== by 0x1553F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39841== by 0x102D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39841== by 0x1026BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39841== by 0x6277D38: PetscInitialize (pinit.c:924) ==39841== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39841== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39841== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39841== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39841== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39841== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39841== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39841== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==39841== ==39841== Open file descriptor 145: ==39841== ==39841== ==39841== Open file descriptor 142: ==39841== ==39841== ==39841== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==39841== ==39841== ==39841== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39841== ==39841== ==39841== ==39841== HEAP SUMMARY: ==39841== in use at exit: 36,765 bytes in 312 blocks ==39841== total heap usage: 738,488 allocs, 738,176 frees, 41,732,312 bytes allocated ==39841== ==39841== LEAK SUMMARY: ==39841== definitely lost: 0 bytes in 0 blocks ==39841== indirectly lost: 0 bytes in 0 blocks ==39841== possibly lost: 0 bytes in 0 blocks ==39841== still reachable: 120 bytes in 4 blocks ==39841== suppressed: 36,645 bytes in 308 blocks ==39841== Reachable blocks (those to which a pointer was found) are not shown. ==39841== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39841== ==39841== For lists of detected and suppressed errors, rerun with: -s ==39841== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)