==40659== Memcheck, a memory error detector ==40659== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40659== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40659== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40659== Parent PID: 24246 ==40659== ==40659== ==40659== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40659== Open file descriptor 12: ==40659== at 0x113570FD: pipe (pipe.c:29) ==40659== by 0x1B4E307D: ??? ==40659== by 0x145504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40659== by 0x11C4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40659== by 0x11BE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40659== by 0x11D94D38: PetscInitialize (pinit.c:924) ==40659== by 0x10B91E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40659== by 0x10B91EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40659== by 0x23B3A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40659== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40659== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40659== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40659== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40659== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40659== ==40659== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40659== at 0x1135BA9C: __open_nocancel (open64_nocancel.c:39) ==40659== by 0x112DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40659== by 0x6122822: ??? ==40659== by 0x612296F: ??? ==40659== by 0x145F56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40659== by 0x145F5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40659== by 0x145AB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40659== by 0x145502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40659== by 0x11C4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40659== by 0x11BE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40659== by 0x11D94D38: PetscInitialize (pinit.c:924) ==40659== by 0x10B91E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40659== by 0x10B91EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40659== by 0x23B3A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40659== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40659== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40659== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40659== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40659== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40659== ==40659== Open file descriptor 145: ==40659== ==40659== ==40659== Open file descriptor 142: ==40659== ==40659== ==40659== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40659== ==40659== ==40659== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40659== ==40659== ==40659== ==40659== HEAP SUMMARY: ==40659== in use at exit: 35,142 bytes in 286 blocks ==40659== total heap usage: 6,294,650 allocs, 6,294,364 frees, 727,798,840 bytes allocated ==40659== ==40659== LEAK SUMMARY: ==40659== definitely lost: 0 bytes in 0 blocks ==40659== indirectly lost: 0 bytes in 0 blocks ==40659== possibly lost: 0 bytes in 0 blocks ==40659== still reachable: 56 bytes in 3 blocks ==40659== suppressed: 35,086 bytes in 283 blocks ==40659== Reachable blocks (those to which a pointer was found) are not shown. ==40659== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40659== ==40659== For lists of detected and suppressed errors, rerun with: -s ==40659== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)