==41084== Memcheck, a memory error detector ==41084== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41084== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41084== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41084== Parent PID: 24246 ==41084== ==41084== ==41084== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41084== Open file descriptor 12: ==41084== at 0x126E30FD: pipe (pipe.c:29) ==41084== by 0x1B4E307D: ??? ==41084== by 0x166724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41084== by 0x11FEB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41084== by 0x11F84D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41084== by 0x6210D38: PetscInitialize (pinit.c:924) ==41084== by 0x11EAAE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41084== by 0x11EAAEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41084== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41084== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41084== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41084== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41084== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41084== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==41084== ==41084== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41084== at 0x126E7A9C: __open_nocancel (open64_nocancel.c:39) ==41084== by 0x1266BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41084== by 0x11EE8822: ??? ==41084== by 0x11EE896F: ??? ==41084== by 0x167176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41084== by 0x16717938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41084== by 0x166CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41084== by 0x166722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41084== by 0x11FEB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41084== by 0x11F84D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41084== by 0x6210D38: PetscInitialize (pinit.c:924) ==41084== by 0x11EAAE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41084== by 0x11EAAEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41084== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41084== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41084== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41084== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41084== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41084== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==41084== ==41084== Open file descriptor 145: ==41084== ==41084== ==41084== Open file descriptor 142: ==41084== ==41084== ==41084== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==41084== ==41084== ==41084== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41084== ==41084== ==41084== ==41084== HEAP SUMMARY: ==41084== in use at exit: 35,295 bytes in 291 blocks ==41084== total heap usage: 1,629,293 allocs, 1,629,002 frees, 132,091,150 bytes allocated ==41084== ==41084== LEAK SUMMARY: ==41084== definitely lost: 0 bytes in 0 blocks ==41084== indirectly lost: 0 bytes in 0 blocks ==41084== possibly lost: 0 bytes in 0 blocks ==41084== still reachable: 136 bytes in 4 blocks ==41084== suppressed: 35,159 bytes in 287 blocks ==41084== Reachable blocks (those to which a pointer was found) are not shown. ==41084== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41084== ==41084== For lists of detected and suppressed errors, rerun with: -s ==41084== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)