==40294== Memcheck, a memory error detector ==40294== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40294== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40294== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningWithRK4AndAdaptivityTutorial -malloc_debug -malloc_dump -memory_info ==40294== Parent PID: 24246 ==40294== ==40294== ==40294== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40294== Open file descriptor 12: ==40294== at 0xF96C0FD: pipe (pipe.c:29) ==40294== by 0x1982207D: ??? ==40294== by 0x12C644CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40294== by 0x10264418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40294== by 0x101FDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40294== by 0x103EDD38: PetscInitialize (pinit.c:924) ==40294== by 0xF26CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40294== by 0xF26CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40294== by 0x120312: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40294== by 0x11B88D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40294== by 0x11DEF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40294== by 0x11DD94: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40294== by 0x11E42B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40294== by 0x119CB5: main (TestRunningWithRK4AndAdaptivityTutorial.cpp:19) ==40294== ==40294== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40294== at 0xF970A9C: __open_nocancel (open64_nocancel.c:39) ==40294== by 0xF8F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40294== by 0xF2AA822: ??? ==40294== by 0xF2AA96F: ??? ==40294== by 0x12D096DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40294== by 0x12D09938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40294== by 0x12CBF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40294== by 0x12C642DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40294== by 0x10264418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40294== by 0x101FDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40294== by 0x103EDD38: PetscInitialize (pinit.c:924) ==40294== by 0xF26CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40294== by 0xF26CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40294== by 0x120312: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40294== by 0x11B88D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40294== by 0x11DEF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40294== by 0x11DD94: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40294== by 0x11E42B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40294== by 0x119CB5: main (TestRunningWithRK4AndAdaptivityTutorial.cpp:19) ==40294== ==40294== Open file descriptor 145: ==40294== ==40294== ==40294== Open file descriptor 142: ==40294== ==40294== ==40294== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningWithRK4AndAdaptivityTutorial_valgrind.txt ==40294== ==40294== ==40294== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40294== ==40294== ==40294== ==40294== HEAP SUMMARY: ==40294== in use at exit: 35,199 bytes in 290 blocks ==40294== total heap usage: 168,546 allocs, 168,256 frees, 43,749,940 bytes allocated ==40294== ==40294== LEAK SUMMARY: ==40294== definitely lost: 0 bytes in 0 blocks ==40294== indirectly lost: 0 bytes in 0 blocks ==40294== possibly lost: 0 bytes in 0 blocks ==40294== still reachable: 56 bytes in 3 blocks ==40294== suppressed: 35,143 bytes in 287 blocks ==40294== Reachable blocks (those to which a pointer was found) are not shown. ==40294== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40294== ==40294== For lists of detected and suppressed errors, rerun with: -s ==40294== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)