==40587== Memcheck, a memory error detector ==40587== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40587== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40587== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40587== Parent PID: 24108 ==40587== ==40587== ==40587== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40587== Open file descriptor 12: ==40587== at 0x112040FD: pipe (pipe.c:29) ==40587== by 0x1B39207D: ??? ==40587== by 0x143E54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40587== by 0x11AFC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40587== by 0x11A95D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40587== by 0x11C41D38: PetscInitialize (pinit.c:924) ==40587== by 0x10A3EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40587== by 0x10A3EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40587== by 0x23B27C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40587== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40587== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40587== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40587== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40587== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40587== ==40587== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40587== at 0x11208A9C: __open_nocancel (open64_nocancel.c:39) ==40587== by 0x1118CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40587== by 0x6122822: ??? ==40587== by 0x612296F: ??? ==40587== by 0x1448A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40587== by 0x1448A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40587== by 0x14440922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40587== by 0x143E52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40587== by 0x11AFC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40587== by 0x11A95D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40587== by 0x11C41D38: PetscInitialize (pinit.c:924) ==40587== by 0x10A3EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40587== by 0x10A3EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40587== by 0x23B27C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40587== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40587== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40587== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40587== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40587== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40587== ==40587== Open file descriptor 145: ==40587== ==40587== ==40587== Open file descriptor 142: ==40587== ==40587== ==40587== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40587== ==40587== ==40587== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40587== ==40587== ==40587== ==40587== HEAP SUMMARY: ==40587== in use at exit: 35,142 bytes in 286 blocks ==40587== total heap usage: 6,294,611 allocs, 6,294,325 frees, 727,795,420 bytes allocated ==40587== ==40587== LEAK SUMMARY: ==40587== definitely lost: 0 bytes in 0 blocks ==40587== indirectly lost: 0 bytes in 0 blocks ==40587== possibly lost: 0 bytes in 0 blocks ==40587== still reachable: 56 bytes in 3 blocks ==40587== suppressed: 35,086 bytes in 283 blocks ==40587== Reachable blocks (those to which a pointer was found) are not shown. ==40587== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40587== ==40587== For lists of detected and suppressed errors, rerun with: -s ==40587== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)