==26987== Memcheck, a memory error detector ==26987== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26987== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26987== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==26987== Parent PID: 24108 ==26987== ==26987== ==26987== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26987== Open file descriptor 12: ==26987== at 0xFCE10FD: pipe (pipe.c:29) ==26987== by 0x196D007D: ??? ==26987== by 0x12B294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26987== by 0x1023C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26987== by 0x101D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26987== by 0x10381D38: PetscInitialize (pinit.c:924) ==26987== by 0xF4B6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26987== by 0xF4B6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26987== by 0x222440: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26987== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26987== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26987== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26987== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26987== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26987== ==26987== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26987== at 0xFCE5A9C: __open_nocancel (open64_nocancel.c:39) ==26987== by 0xFC69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26987== by 0xF4F4822: ??? ==26987== by 0xF4F496F: ??? ==26987== by 0x12BCE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26987== by 0x12BCE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26987== by 0x12B84922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26987== by 0x12B292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26987== by 0x1023C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26987== by 0x101D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26987== by 0x10381D38: PetscInitialize (pinit.c:924) ==26987== by 0xF4B6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26987== by 0xF4B6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26987== by 0x222440: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26987== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26987== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26987== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26987== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26987== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26987== ==26987== Open file descriptor 145: ==26987== ==26987== ==26987== Open file descriptor 142: ==26987== ==26987== ==26987== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==26987== ==26987== ==26987== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26987== ==26987== ==26987== ==26987== HEAP SUMMARY: ==26987== in use at exit: 35,126 bytes in 286 blocks ==26987== total heap usage: 8,105,321 allocs, 8,105,035 frees, 1,364,721,834 bytes allocated ==26987== ==26987== LEAK SUMMARY: ==26987== definitely lost: 0 bytes in 0 blocks ==26987== indirectly lost: 0 bytes in 0 blocks ==26987== possibly lost: 0 bytes in 0 blocks ==26987== still reachable: 56 bytes in 3 blocks ==26987== suppressed: 35,070 bytes in 283 blocks ==26987== Reachable blocks (those to which a pointer was found) are not shown. ==26987== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26987== ==26987== For lists of detected and suppressed errors, rerun with: -s ==26987== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)