==37609== Memcheck, a memory error detector ==37609== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==37609== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==37609== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==37609== Parent PID: 24108 ==37609== ==37609== ==37609== FILE DESCRIPTORS: 9 open (3 std) at exit. ==37609== Open file descriptor 12: ==37609== at 0xF9440FD: pipe (pipe.c:29) ==37609== by 0x196CF07D: ??? ==37609== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==37609== by 0x1023C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37609== by 0x101D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37609== by 0x10381D38: PetscInitialize (pinit.c:924) ==37609== by 0xF119E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==37609== by 0xF119EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==37609== by 0x1D7568: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==37609== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==37609== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==37609== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==37609== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==37609== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==37609== ==37609== Open file descriptor 8: /dev/shm/open_mpi.0000 ==37609== at 0xF948A9C: __open_nocancel (open64_nocancel.c:39) ==37609== by 0xF8CCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==37609== by 0xF157822: ??? ==37609== by 0xF15796F: ??? ==37609== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37609== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37609== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37609== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==37609== by 0x1023C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37609== by 0x101D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37609== by 0x10381D38: PetscInitialize (pinit.c:924) ==37609== by 0xF119E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==37609== by 0xF119EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==37609== by 0x1D7568: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==37609== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==37609== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==37609== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==37609== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==37609== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==37609== ==37609== Open file descriptor 145: ==37609== ==37609== ==37609== Open file descriptor 142: ==37609== ==37609== ==37609== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==37609== ==37609== ==37609== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==37609== ==37609== ==37609== ==37609== HEAP SUMMARY: ==37609== in use at exit: 35,142 bytes in 287 blocks ==37609== total heap usage: 11,666,353 allocs, 11,666,066 frees, 877,102,926 bytes allocated ==37609== ==37609== LEAK SUMMARY: ==37609== definitely lost: 0 bytes in 0 blocks ==37609== indirectly lost: 0 bytes in 0 blocks ==37609== possibly lost: 0 bytes in 0 blocks ==37609== still reachable: 72 bytes in 4 blocks ==37609== suppressed: 35,070 bytes in 283 blocks ==37609== Reachable blocks (those to which a pointer was found) are not shown. ==37609== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==37609== ==37609== For lists of detected and suppressed errors, rerun with: -s ==37609== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)