==27323== Memcheck, a memory error detector ==27323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27323== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==27323== Parent PID: 24782 ==27323== ==27323== ==27323== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27323== Open file descriptor 12: ==27323== at 0x10F4C0FD: pipe (pipe.c:29) ==27323== by 0x1982207D: ??? ==27323== by 0x14DD84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27323== by 0x10AB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27323== by 0x10A4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27323== by 0xF742D38: PetscInitialize (pinit.c:924) ==27323== by 0xF26CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27323== by 0xF26CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27323== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27323== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27323== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27323== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27323== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27323== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==27323== ==27323== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27323== at 0x10F50A9C: __open_nocancel (open64_nocancel.c:39) ==27323== by 0x10ED4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27323== by 0xF2AA822: ??? ==27323== by 0xF2AA96F: ??? ==27323== by 0x14E7D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27323== by 0x14E7D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27323== by 0x14E33922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27323== by 0x14DD82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27323== by 0x10AB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27323== by 0x10A4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27323== by 0xF742D38: PetscInitialize (pinit.c:924) ==27323== by 0xF26CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27323== by 0xF26CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27323== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27323== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27323== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27323== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27323== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27323== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==27323== ==27323== Open file descriptor 145: ==27323== ==27323== ==27323== Open file descriptor 142: ==27323== ==27323== ==27323== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==27323== ==27323== ==27323== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27323== ==27323== ==27323== ==27323== HEAP SUMMARY: ==27323== in use at exit: 35,199 bytes in 290 blocks ==27323== total heap usage: 859,100 allocs, 858,810 frees, 173,597,600 bytes allocated ==27323== ==27323== LEAK SUMMARY: ==27323== definitely lost: 0 bytes in 0 blocks ==27323== indirectly lost: 0 bytes in 0 blocks ==27323== possibly lost: 0 bytes in 0 blocks ==27323== still reachable: 56 bytes in 3 blocks ==27323== suppressed: 35,143 bytes in 287 blocks ==27323== Reachable blocks (those to which a pointer was found) are not shown. ==27323== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27323== ==27323== For lists of detected and suppressed errors, rerun with: -s ==27323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)