==41198== Memcheck, a memory error detector ==41198== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41198== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41198== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==41198== Parent PID: 24782 ==41198== ==41198== ==41198== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41198== Open file descriptor 12: ==41198== at 0x129670FD: pipe (pipe.c:29) ==41198== by 0x1B4E407D: ??? ==41198== by 0x166A44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41198== by 0x1226F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41198== by 0x12208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41198== by 0x6277D38: PetscInitialize (pinit.c:924) ==41198== by 0x12151E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41198== by 0x12151EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41198== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41198== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41198== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41198== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41198== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41198== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==41198== ==41198== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41198== at 0x1296BA9C: __open_nocancel (open64_nocancel.c:39) ==41198== by 0x128EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41198== by 0x6122822: ??? ==41198== by 0x612296F: ??? ==41198== by 0x167496DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41198== by 0x16749938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41198== by 0x166FF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41198== by 0x166A42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41198== by 0x1226F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41198== by 0x12208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41198== by 0x6277D38: PetscInitialize (pinit.c:924) ==41198== by 0x12151E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41198== by 0x12151EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41198== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41198== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41198== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41198== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41198== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41198== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==41198== ==41198== Open file descriptor 145: ==41198== ==41198== ==41198== Open file descriptor 142: ==41198== ==41198== ==41198== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt ==41198== ==41198== ==41198== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41198== ==41198== ==41198== ==41198== HEAP SUMMARY: ==41198== in use at exit: 35,183 bytes in 289 blocks ==41198== total heap usage: 504,255 allocs, 503,966 frees, 216,083,833 bytes allocated ==41198== ==41198== LEAK SUMMARY: ==41198== definitely lost: 0 bytes in 0 blocks ==41198== indirectly lost: 0 bytes in 0 blocks ==41198== possibly lost: 0 bytes in 0 blocks ==41198== still reachable: 24 bytes in 2 blocks ==41198== suppressed: 35,159 bytes in 287 blocks ==41198== Reachable blocks (those to which a pointer was found) are not shown. ==41198== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41198== ==41198== For lists of detected and suppressed errors, rerun with: -s ==41198== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)