==40341== Memcheck, a memory error detector ==40341== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40341== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40341== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40341== Parent PID: 24339 ==40341== ==40341== ==40341== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40341== Open file descriptor 12: ==40341== at 0x10D2F0FD: pipe (pipe.c:29) ==40341== by 0x1972F07D: ??? ==40341== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40341== by 0x1097C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40341== by 0x10915D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40341== by 0xF60CD38: PetscInitialize (pinit.c:924) ==40341== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40341== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40341== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40341== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40341== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40341== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40341== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40341== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40341== ==40341== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40341== at 0x10D33A9C: __open_nocancel (open64_nocancel.c:39) ==40341== by 0x10CB7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40341== by 0xF1B6822: ??? ==40341== by 0xF1B696F: ??? ==40341== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40341== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40341== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40341== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40341== by 0x1097C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40341== by 0x10915D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40341== by 0xF60CD38: PetscInitialize (pinit.c:924) ==40341== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40341== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40341== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40341== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40341== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40341== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40341== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40341== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40341== ==40341== Open file descriptor 145: ==40341== ==40341== ==40341== Open file descriptor 142: ==40341== ==40341== ==40341== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt ==40341== ==40341== ==40341== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40341== ==40341== ==40341== ==40341== HEAP SUMMARY: ==40341== in use at exit: 35,126 bytes in 286 blocks ==40341== total heap usage: 638,763 allocs, 638,477 frees, 181,774,005 bytes allocated ==40341== ==40341== LEAK SUMMARY: ==40341== definitely lost: 0 bytes in 0 blocks ==40341== indirectly lost: 0 bytes in 0 blocks ==40341== possibly lost: 0 bytes in 0 blocks ==40341== still reachable: 56 bytes in 3 blocks ==40341== suppressed: 35,070 bytes in 283 blocks ==40341== Reachable blocks (those to which a pointer was found) are not shown. ==40341== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40341== ==40341== For lists of detected and suppressed errors, rerun with: -s ==40341== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)