==40481== Memcheck, a memory error detector ==40481== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40481== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40481== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40481== Parent PID: 24197 ==40481== ==40481== ==40481== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40481== Open file descriptor 12: ==40481== at 0xDD050FD: pipe (pipe.c:29) ==40481== by 0x1982207D: ??? ==40481== by 0x12C8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40481== by 0x10264418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40481== by 0x101FDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40481== by 0x103EDD38: PetscInitialize (pinit.c:924) ==40481== by 0xD603E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40481== by 0xD603EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40481== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40481== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40481== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40481== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40481== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40481== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40481== ==40481== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40481== at 0xDD09A9C: __open_nocancel (open64_nocancel.c:39) ==40481== by 0xDC8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40481== by 0xD641822: ??? ==40481== by 0xD64196F: ??? ==40481== by 0x12D306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40481== by 0x12D30938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40481== by 0x12CE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40481== by 0x12C8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40481== by 0x10264418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40481== by 0x101FDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40481== by 0x103EDD38: PetscInitialize (pinit.c:924) ==40481== by 0xD603E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40481== by 0xD603EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40481== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40481== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40481== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40481== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40481== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40481== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40481== ==40481== Open file descriptor 145: ==40481== ==40481== ==40481== Open file descriptor 142: ==40481== ==40481== ==40481== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==40481== ==40481== ==40481== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40481== ==40481== ==40481== ==40481== HEAP SUMMARY: ==40481== in use at exit: 35,126 bytes in 286 blocks ==40481== total heap usage: 40,670,910 allocs, 40,670,624 frees, 2,499,234,586 bytes allocated ==40481== ==40481== LEAK SUMMARY: ==40481== definitely lost: 0 bytes in 0 blocks ==40481== indirectly lost: 0 bytes in 0 blocks ==40481== possibly lost: 0 bytes in 0 blocks ==40481== still reachable: 56 bytes in 3 blocks ==40481== suppressed: 35,070 bytes in 283 blocks ==40481== Reachable blocks (those to which a pointer was found) are not shown. ==40481== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40481== ==40481== For lists of detected and suppressed errors, rerun with: -s ==40481== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)