==40517== Memcheck, a memory error detector ==40517== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40517== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40517== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40517== Parent PID: 24470 ==40517== ==40517== ==40517== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40517== Open file descriptor 12: ==40517== at 0xDBB50FD: pipe (pipe.c:29) ==40517== by 0x196CF07D: ??? ==40517== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40517== by 0x10111418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40517== by 0x100AAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40517== by 0x1029AD38: PetscInitialize (pinit.c:924) ==40517== by 0xD4B3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40517== by 0xD4B3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40517== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40517== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40517== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40517== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40517== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40517== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40517== ==40517== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40517== at 0xDBB9A9C: __open_nocancel (open64_nocancel.c:39) ==40517== by 0xDB3DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40517== by 0xD4F1822: ??? ==40517== by 0xD4F196F: ??? ==40517== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40517== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40517== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40517== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40517== by 0x10111418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40517== by 0x100AAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40517== by 0x1029AD38: PetscInitialize (pinit.c:924) ==40517== by 0xD4B3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40517== by 0xD4B3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40517== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40517== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40517== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40517== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40517== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40517== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40517== ==40517== Open file descriptor 145: ==40517== ==40517== ==40517== Open file descriptor 142: ==40517== ==40517== ==40517== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==40517== ==40517== ==40517== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40517== ==40517== ==40517== ==40517== HEAP SUMMARY: ==40517== in use at exit: 35,126 bytes in 286 blocks ==40517== total heap usage: 40,670,863 allocs, 40,670,577 frees, 2,499,229,881 bytes allocated ==40517== ==40517== LEAK SUMMARY: ==40517== definitely lost: 0 bytes in 0 blocks ==40517== indirectly lost: 0 bytes in 0 blocks ==40517== possibly lost: 0 bytes in 0 blocks ==40517== still reachable: 56 bytes in 3 blocks ==40517== suppressed: 35,070 bytes in 283 blocks ==40517== Reachable blocks (those to which a pointer was found) are not shown. ==40517== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40517== ==40517== For lists of detected and suppressed errors, rerun with: -s ==40517== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)