==40385== Memcheck, a memory error detector ==40385== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40385== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40385== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40385== Parent PID: 24478 ==40385== ==40385== ==40385== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40385== Open file descriptor 12: ==40385== at 0xFBB80FD: pipe (pipe.c:29) ==40385== by 0x196D107D: ??? ==40385== by 0x12B294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40385== by 0x10113418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40385== by 0x100ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40385== by 0x1029CD38: PetscInitialize (pinit.c:924) ==40385== by 0xF4B8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40385== by 0xF4B8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40385== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40385== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40385== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40385== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40385== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40385== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40385== ==40385== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40385== at 0xFBBCA9C: __open_nocancel (open64_nocancel.c:39) ==40385== by 0xFB40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40385== by 0xF4F6822: ??? ==40385== by 0xF4F696F: ??? ==40385== by 0x12BCE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40385== by 0x12BCE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40385== by 0x12B84922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40385== by 0x12B292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40385== by 0x10113418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40385== by 0x100ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40385== by 0x1029CD38: PetscInitialize (pinit.c:924) ==40385== by 0xF4B8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40385== by 0xF4B8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40385== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40385== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40385== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40385== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40385== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40385== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40385== ==40385== Open file descriptor 145: ==40385== ==40385== ==40385== Open file descriptor 142: ==40385== ==40385== ==40385== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==40385== ==40385== ==40385== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40385== ==40385== ==40385== ==40385== HEAP SUMMARY: ==40385== in use at exit: 35,126 bytes in 286 blocks ==40385== total heap usage: 2,077,846 allocs, 2,077,560 frees, 377,990,968 bytes allocated ==40385== ==40385== LEAK SUMMARY: ==40385== definitely lost: 0 bytes in 0 blocks ==40385== indirectly lost: 0 bytes in 0 blocks ==40385== possibly lost: 0 bytes in 0 blocks ==40385== still reachable: 56 bytes in 3 blocks ==40385== suppressed: 35,070 bytes in 283 blocks ==40385== Reachable blocks (those to which a pointer was found) are not shown. ==40385== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40385== ==40385== For lists of detected and suppressed errors, rerun with: -s ==40385== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)