==26248== Memcheck, a memory error detector ==26248== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26248== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26248== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26248== Parent PID: 24478 ==26248== ==26248== ==26248== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26248== Open file descriptor 12: ==26248== at 0xDB690FD: pipe (pipe.c:29) ==26248== by 0x196D207D: ??? ==26248== by 0x12ABD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26248== by 0xFE10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26248== by 0xFDA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26248== by 0xFF57D38: PetscInitialize (pinit.c:924) ==26248== by 0xD76CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26248== by 0xD76CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26248== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26248== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26248== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26248== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26248== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26248== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26248== ==26248== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26248== at 0xDB6DA9C: __open_nocancel (open64_nocancel.c:39) ==26248== by 0xDAF1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26248== by 0xD7AA822: ??? ==26248== by 0xD7AA96F: ??? ==26248== by 0x12B626DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26248== by 0x12B62938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26248== by 0x12B18922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26248== by 0x12ABD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26248== by 0xFE10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26248== by 0xFDA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26248== by 0xFF57D38: PetscInitialize (pinit.c:924) ==26248== by 0xD76CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26248== by 0xD76CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26248== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26248== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26248== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26248== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26248== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26248== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26248== ==26248== Open file descriptor 145: ==26248== ==26248== ==26248== Open file descriptor 142: ==26248== ==26248== ==26248== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26248== ==26248== ==26248== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26248== ==26248== ==26248== ==26248== HEAP SUMMARY: ==26248== in use at exit: 35,167 bytes in 289 blocks ==26248== total heap usage: 42,206 allocs, 41,917 frees, 8,230,131 bytes allocated ==26248== ==26248== LEAK SUMMARY: ==26248== definitely lost: 0 bytes in 0 blocks ==26248== indirectly lost: 0 bytes in 0 blocks ==26248== possibly lost: 0 bytes in 0 blocks ==26248== still reachable: 24 bytes in 2 blocks ==26248== suppressed: 35,143 bytes in 287 blocks ==26248== Reachable blocks (those to which a pointer was found) are not shown. ==26248== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26248== ==26248== For lists of detected and suppressed errors, rerun with: -s ==26248== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)