==26040== Memcheck, a memory error detector ==26040== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26040== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26040== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26040== Parent PID: 24239 ==26040== ==26040== ==26040== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26040== Open file descriptor 12: ==26040== at 0xDB670FD: pipe (pipe.c:29) ==26040== by 0x196D007D: ??? ==26040== by 0x12ABD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26040== by 0xFE0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26040== by 0xFDA7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26040== by 0xFF55D38: PetscInitialize (pinit.c:924) ==26040== by 0xD76AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26040== by 0xD76AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26040== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26040== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26040== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26040== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26040== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26040== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26040== ==26040== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26040== at 0xDB6BA9C: __open_nocancel (open64_nocancel.c:39) ==26040== by 0xDAEFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26040== by 0xD7A8822: ??? ==26040== by 0xD7A896F: ??? ==26040== by 0x12B626DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26040== by 0x12B62938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26040== by 0x12B18922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26040== by 0x12ABD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26040== by 0xFE0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26040== by 0xFDA7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26040== by 0xFF55D38: PetscInitialize (pinit.c:924) ==26040== by 0xD76AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26040== by 0xD76AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26040== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26040== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26040== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26040== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26040== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26040== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26040== ==26040== Open file descriptor 145: ==26040== ==26040== ==26040== Open file descriptor 142: ==26040== ==26040== ==26040== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26040== ==26040== ==26040== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26040== ==26040== ==26040== ==26040== HEAP SUMMARY: ==26040== in use at exit: 35,167 bytes in 289 blocks ==26040== total heap usage: 42,206 allocs, 41,917 frees, 8,230,351 bytes allocated ==26040== ==26040== LEAK SUMMARY: ==26040== definitely lost: 0 bytes in 0 blocks ==26040== indirectly lost: 0 bytes in 0 blocks ==26040== possibly lost: 0 bytes in 0 blocks ==26040== still reachable: 24 bytes in 2 blocks ==26040== suppressed: 35,143 bytes in 287 blocks ==26040== Reachable blocks (those to which a pointer was found) are not shown. ==26040== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26040== ==26040== For lists of detected and suppressed errors, rerun with: -s ==26040== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)