==40936== Memcheck, a memory error detector ==40936== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40936== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40936== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40936== Parent PID: 24147 ==40936== ==40936== ==40936== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40936== Open file descriptor 12: ==40936== at 0x125900FD: pipe (pipe.c:29) ==40936== by 0x1B39007D: ??? ==40936== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40936== by 0x11E98418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40936== by 0x11E31D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40936== by 0x6210D38: PetscInitialize (pinit.c:924) ==40936== by 0x11D57E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40936== by 0x11D57EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40936== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40936== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40936== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40936== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40936== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40936== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40936== ==40936== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40936== at 0x12594A9C: __open_nocancel (open64_nocancel.c:39) ==40936== by 0x12518BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40936== by 0x11D95822: ??? ==40936== by 0x11D9596F: ??? ==40936== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40936== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40936== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40936== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40936== by 0x11E98418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40936== by 0x11E31D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40936== by 0x6210D38: PetscInitialize (pinit.c:924) ==40936== by 0x11D57E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40936== by 0x11D57EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40936== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40936== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40936== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40936== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40936== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40936== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40936== ==40936== Open file descriptor 145: ==40936== ==40936== ==40936== Open file descriptor 142: ==40936== ==40936== ==40936== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==40936== ==40936== ==40936== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40936== ==40936== ==40936== ==40936== HEAP SUMMARY: ==40936== in use at exit: 35,215 bytes in 290 blocks ==40936== total heap usage: 1,739,487 allocs, 1,739,197 frees, 184,474,122 bytes allocated ==40936== ==40936== LEAK SUMMARY: ==40936== definitely lost: 0 bytes in 0 blocks ==40936== indirectly lost: 0 bytes in 0 blocks ==40936== possibly lost: 0 bytes in 0 blocks ==40936== still reachable: 56 bytes in 3 blocks ==40936== suppressed: 35,159 bytes in 287 blocks ==40936== Reachable blocks (those to which a pointer was found) are not shown. ==40936== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40936== ==40936== For lists of detected and suppressed errors, rerun with: -s ==40936== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)