==25931== Memcheck, a memory error detector ==25931== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25931== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25931== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==25931== Parent PID: 24162 ==25931== ==25931== ==25931== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25931== Open file descriptor 12: ==25931== at 0xF2F30FD: pipe (pipe.c:29) ==25931== by 0x19A1A07D: ??? ==25931== by 0x13FBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25931== by 0xEF40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25931== by 0xEED9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25931== by 0xDBD0D38: PetscInitialize (pinit.c:924) ==25931== by 0xDA3FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25931== by 0xDA3FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25931== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25931== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25931== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25931== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25931== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25931== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25931== ==25931== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25931== at 0xF2F7A9C: __open_nocancel (open64_nocancel.c:39) ==25931== by 0xF27BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25931== by 0xDA7D822: ??? ==25931== by 0xDA7D96F: ??? ==25931== by 0x140616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25931== by 0x14061938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25931== by 0x14017922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25931== by 0x13FBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25931== by 0xEF40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25931== by 0xEED9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25931== by 0xDBD0D38: PetscInitialize (pinit.c:924) ==25931== by 0xDA3FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25931== by 0xDA3FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25931== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25931== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25931== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25931== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25931== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25931== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25931== ==25931== Open file descriptor 145: ==25931== ==25931== ==25931== Open file descriptor 142: ==25931== ==25931== ==25931== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==25931== ==25931== ==25931== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25931== ==25931== ==25931== ==25931== HEAP SUMMARY: ==25931== in use at exit: 35,167 bytes in 289 blocks ==25931== total heap usage: 150,117 allocs, 149,828 frees, 18,569,812 bytes allocated ==25931== ==25931== LEAK SUMMARY: ==25931== definitely lost: 0 bytes in 0 blocks ==25931== indirectly lost: 0 bytes in 0 blocks ==25931== possibly lost: 0 bytes in 0 blocks ==25931== still reachable: 24 bytes in 2 blocks ==25931== suppressed: 35,143 bytes in 287 blocks ==25931== Reachable blocks (those to which a pointer was found) are not shown. ==25931== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25931== ==25931== For lists of detected and suppressed errors, rerun with: -s ==25931== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)