==40582== Memcheck, a memory error detector ==40582== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40582== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40582== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40582== Parent PID: 24162 ==40582== ==40582== ==40582== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40582== Open file descriptor 12: ==40582== at 0x1295A0FD: pipe (pipe.c:29) ==40582== by 0x1B71907D: ??? ==40582== by 0x168A44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40582== by 0x12262418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40582== by 0x121FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40582== by 0x62B4D38: PetscInitialize (pinit.c:924) ==40582== by 0x12144E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40582== by 0x12144EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40582== by 0x2244A1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40582== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40582== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40582== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40582== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40582== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40582== ==40582== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40582== at 0x1295EA9C: __open_nocancel (open64_nocancel.c:39) ==40582== by 0x128E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40582== by 0x615F822: ??? ==40582== by 0x615F96F: ??? ==40582== by 0x169496DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40582== by 0x16949938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40582== by 0x168FF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40582== by 0x168A42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40582== by 0x12262418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40582== by 0x121FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40582== by 0x62B4D38: PetscInitialize (pinit.c:924) ==40582== by 0x12144E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40582== by 0x12144EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40582== by 0x2244A1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40582== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40582== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40582== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40582== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40582== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40582== ==40582== Open file descriptor 145: ==40582== ==40582== ==40582== Open file descriptor 142: ==40582== ==40582== ==40582== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40582== ==40582== ==40582== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40582== ==40582== ==40582== ==40582== HEAP SUMMARY: ==40582== in use at exit: 35,142 bytes in 286 blocks ==40582== total heap usage: 3,697,968 allocs, 3,697,682 frees, 289,262,496 bytes allocated ==40582== ==40582== LEAK SUMMARY: ==40582== definitely lost: 0 bytes in 0 blocks ==40582== indirectly lost: 0 bytes in 0 blocks ==40582== possibly lost: 0 bytes in 0 blocks ==40582== still reachable: 56 bytes in 3 blocks ==40582== suppressed: 35,086 bytes in 283 blocks ==40582== Reachable blocks (those to which a pointer was found) are not shown. ==40582== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40582== ==40582== For lists of detected and suppressed errors, rerun with: -s ==40582== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)