==26998== Memcheck, a memory error detector ==26998== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26998== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26998== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==26998== Parent PID: 24162 ==26998== ==26998== ==26998== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26998== Open file descriptor 12: ==26998== at 0x1002C0FD: pipe (pipe.c:29) ==26998== by 0x19A1B07D: ??? ==26998== by 0x12E6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26998== by 0x10587418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26998== by 0x10520D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26998== by 0x106CCD38: PetscInitialize (pinit.c:924) ==26998== by 0xF801E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26998== by 0xF801EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26998== by 0x22248E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26998== by 0x21BB51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26998== by 0x21F68A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26998== by 0x21F52A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26998== by 0x21FBC1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26998== by 0x219F35: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26998== ==26998== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26998== at 0x10030A9C: __open_nocancel (open64_nocancel.c:39) ==26998== by 0xFFB4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26998== by 0xF83F822: ??? ==26998== by 0xF83F96F: ??? ==26998== by 0x12F146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26998== by 0x12F14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26998== by 0x12ECA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26998== by 0x12E6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26998== by 0x10587418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26998== by 0x10520D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26998== by 0x106CCD38: PetscInitialize (pinit.c:924) ==26998== by 0xF801E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26998== by 0xF801EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26998== by 0x22248E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26998== by 0x21BB51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26998== by 0x21F68A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26998== by 0x21F52A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26998== by 0x21FBC1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26998== by 0x219F35: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26998== ==26998== Open file descriptor 145: ==26998== ==26998== ==26998== Open file descriptor 142: ==26998== ==26998== ==26998== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==26998== ==26998== ==26998== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26998== ==26998== ==26998== ==26998== HEAP SUMMARY: ==26998== in use at exit: 35,126 bytes in 286 blocks ==26998== total heap usage: 8,105,538 allocs, 8,105,252 frees, 1,364,736,367 bytes allocated ==26998== ==26998== LEAK SUMMARY: ==26998== definitely lost: 0 bytes in 0 blocks ==26998== indirectly lost: 0 bytes in 0 blocks ==26998== possibly lost: 0 bytes in 0 blocks ==26998== still reachable: 56 bytes in 3 blocks ==26998== suppressed: 35,070 bytes in 283 blocks ==26998== Reachable blocks (those to which a pointer was found) are not shown. ==26998== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26998== ==26998== For lists of detected and suppressed errors, rerun with: -s ==26998== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)