==40085== Memcheck, a memory error detector ==40085== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40085== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40085== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40085== Parent PID: 24162 ==40085== ==40085== ==40085== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40085== Open file descriptor 12: ==40085== at 0xFB640FD: pipe (pipe.c:29) ==40085== by 0x19A1D07D: ??? ==40085== by 0x12E644CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40085== by 0x1045C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40085== by 0x103F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40085== by 0x105E5D38: PetscInitialize (pinit.c:924) ==40085== by 0xF464E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40085== by 0xF464EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40085== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40085== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40085== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40085== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40085== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40085== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40085== ==40085== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40085== at 0xFB68A9C: __open_nocancel (open64_nocancel.c:39) ==40085== by 0xFAECBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40085== by 0xF4A2822: ??? ==40085== by 0xF4A296F: ??? ==40085== by 0x12F096DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40085== by 0x12F09938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40085== by 0x12EBF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40085== by 0x12E642DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40085== by 0x1045C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40085== by 0x103F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40085== by 0x105E5D38: PetscInitialize (pinit.c:924) ==40085== by 0xF464E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40085== by 0xF464EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40085== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40085== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40085== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40085== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40085== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40085== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40085== ==40085== Open file descriptor 145: ==40085== ==40085== ==40085== Open file descriptor 142: ==40085== ==40085== ==40085== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==40085== ==40085== ==40085== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40085== ==40085== ==40085== ==40085== HEAP SUMMARY: ==40085== in use at exit: 35,126 bytes in 286 blocks ==40085== total heap usage: 5,207,427 allocs, 5,207,141 frees, 448,874,137 bytes allocated ==40085== ==40085== LEAK SUMMARY: ==40085== definitely lost: 0 bytes in 0 blocks ==40085== indirectly lost: 0 bytes in 0 blocks ==40085== possibly lost: 0 bytes in 0 blocks ==40085== still reachable: 56 bytes in 3 blocks ==40085== suppressed: 35,070 bytes in 283 blocks ==40085== Reachable blocks (those to which a pointer was found) are not shown. ==40085== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40085== ==40085== For lists of detected and suppressed errors, rerun with: -s ==40085== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)