==40318== Memcheck, a memory error detector ==40318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40318== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40318== Parent PID: 24281 ==40318== ==40318== ==40318== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40318== Open file descriptor 12: ==40318== at 0x10CD00FD: pipe (pipe.c:29) ==40318== by 0x196CF07D: ??? ==40318== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40318== by 0x1091D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40318== by 0x108B6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40318== by 0xF5ADD38: PetscInitialize (pinit.c:924) ==40318== by 0xF119E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40318== by 0xF119EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40318== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40318== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40318== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40318== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40318== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40318== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40318== ==40318== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40318== at 0x10CD4A9C: __open_nocancel (open64_nocancel.c:39) ==40318== by 0x10C58BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40318== by 0xF157822: ??? ==40318== by 0xF15796F: ??? ==40318== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40318== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40318== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40318== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40318== by 0x1091D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40318== by 0x108B6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40318== by 0xF5ADD38: PetscInitialize (pinit.c:924) ==40318== by 0xF119E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40318== by 0xF119EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40318== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40318== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40318== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40318== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40318== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40318== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40318== ==40318== Open file descriptor 145: ==40318== ==40318== ==40318== Open file descriptor 142: ==40318== ==40318== ==40318== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==40318== ==40318== ==40318== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40318== ==40318== ==40318== ==40318== HEAP SUMMARY: ==40318== in use at exit: 35,126 bytes in 286 blocks ==40318== total heap usage: 3,485,276 allocs, 3,484,990 frees, 939,085,962 bytes allocated ==40318== ==40318== LEAK SUMMARY: ==40318== definitely lost: 0 bytes in 0 blocks ==40318== indirectly lost: 0 bytes in 0 blocks ==40318== possibly lost: 0 bytes in 0 blocks ==40318== still reachable: 56 bytes in 3 blocks ==40318== suppressed: 35,070 bytes in 283 blocks ==40318== Reachable blocks (those to which a pointer was found) are not shown. ==40318== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40318== ==40318== For lists of detected and suppressed errors, rerun with: -s ==40318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)