==40686== Memcheck, a memory error detector ==40686== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40686== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40686== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40686== Parent PID: 24262 ==40686== ==40686== ==40686== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40686== Open file descriptor 12: ==40686== at 0x125D20FD: pipe (pipe.c:29) ==40686== by 0x1B39007D: ??? ==40686== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40686== by 0x11EDA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40686== by 0x11E73D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40686== by 0x6277D38: PetscInitialize (pinit.c:924) ==40686== by 0x11DBCE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40686== by 0x11DBCEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40686== by 0x224375: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40686== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40686== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40686== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40686== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40686== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40686== ==40686== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40686== at 0x125D6A9C: __open_nocancel (open64_nocancel.c:39) ==40686== by 0x1255ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40686== by 0x6122822: ??? ==40686== by 0x612296F: ??? ==40686== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40686== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40686== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40686== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40686== by 0x11EDA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40686== by 0x11E73D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40686== by 0x6277D38: PetscInitialize (pinit.c:924) ==40686== by 0x11DBCE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40686== by 0x11DBCEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40686== by 0x224375: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40686== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40686== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40686== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40686== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40686== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40686== ==40686== Open file descriptor 145: ==40686== ==40686== ==40686== Open file descriptor 142: ==40686== ==40686== ==40686== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40686== ==40686== ==40686== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40686== ==40686== ==40686== ==40686== HEAP SUMMARY: ==40686== in use at exit: 35,142 bytes in 286 blocks ==40686== total heap usage: 3,697,742 allocs, 3,697,456 frees, 289,246,000 bytes allocated ==40686== ==40686== LEAK SUMMARY: ==40686== definitely lost: 0 bytes in 0 blocks ==40686== indirectly lost: 0 bytes in 0 blocks ==40686== possibly lost: 0 bytes in 0 blocks ==40686== still reachable: 56 bytes in 3 blocks ==40686== suppressed: 35,086 bytes in 283 blocks ==40686== Reachable blocks (those to which a pointer was found) are not shown. ==40686== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40686== ==40686== For lists of detected and suppressed errors, rerun with: -s ==40686== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)