==25964== Memcheck, a memory error detector ==25964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==25964== Parent PID: 24240 ==25964== ==25964== ==25964== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25964== Open file descriptor 12: ==25964== at 0xF00A0FD: pipe (pipe.c:29) ==25964== by 0x1973207D: ??? ==25964== by 0x13CD34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25964== by 0xEC57418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25964== by 0xEBF0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25964== by 0xD8E7D38: PetscInitialize (pinit.c:924) ==25964== by 0xD756E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25964== by 0xD756EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25964== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25964== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25964== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25964== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25964== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25964== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25964== ==25964== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25964== at 0xF00EA9C: __open_nocancel (open64_nocancel.c:39) ==25964== by 0xEF92BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25964== by 0xD794822: ??? ==25964== by 0xD79496F: ??? ==25964== by 0x13D786DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25964== by 0x13D78938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25964== by 0x13D2E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25964== by 0x13CD32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25964== by 0xEC57418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25964== by 0xEBF0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25964== by 0xD8E7D38: PetscInitialize (pinit.c:924) ==25964== by 0xD756E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25964== by 0xD756EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25964== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25964== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25964== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25964== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25964== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25964== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25964== ==25964== Open file descriptor 145: ==25964== ==25964== ==25964== Open file descriptor 142: ==25964== ==25964== ==25964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==25964== ==25964== ==25964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25964== ==25964== ==25964== ==25964== HEAP SUMMARY: ==25964== in use at exit: 35,167 bytes in 289 blocks ==25964== total heap usage: 149,898 allocs, 149,609 frees, 18,553,628 bytes allocated ==25964== ==25964== LEAK SUMMARY: ==25964== definitely lost: 0 bytes in 0 blocks ==25964== indirectly lost: 0 bytes in 0 blocks ==25964== possibly lost: 0 bytes in 0 blocks ==25964== still reachable: 24 bytes in 2 blocks ==25964== suppressed: 35,143 bytes in 287 blocks ==25964== Reachable blocks (those to which a pointer was found) are not shown. ==25964== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25964== ==25964== For lists of detected and suppressed errors, rerun with: -s ==25964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40)