==40935== Memcheck, a memory error detector ==40935== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40935== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40935== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40935== Parent PID: 24240 ==40935== ==40935== ==40935== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40935== Open file descriptor 12: ==40935== at 0x125F20FD: pipe (pipe.c:29) ==40935== by 0x1B3F207D: ??? ==40935== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40935== by 0x11EFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40935== by 0x11E93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40935== by 0x6210D38: PetscInitialize (pinit.c:924) ==40935== by 0x11DB9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40935== by 0x11DB9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40935== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40935== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40935== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40935== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40935== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40935== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40935== ==40935== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40935== at 0x125F6A9C: __open_nocancel (open64_nocancel.c:39) ==40935== by 0x1257ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40935== by 0x11DF7822: ??? ==40935== by 0x11DF796F: ??? ==40935== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40935== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40935== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40935== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40935== by 0x11EFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40935== by 0x11E93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40935== by 0x6210D38: PetscInitialize (pinit.c:924) ==40935== by 0x11DB9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40935== by 0x11DB9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40935== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40935== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40935== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40935== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40935== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40935== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40935== ==40935== Open file descriptor 145: ==40935== ==40935== ==40935== Open file descriptor 142: ==40935== ==40935== ==40935== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==40935== ==40935== ==40935== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40935== ==40935== ==40935== ==40935== HEAP SUMMARY: ==40935== in use at exit: 35,215 bytes in 290 blocks ==40935== total heap usage: 1,739,487 allocs, 1,739,197 frees, 184,474,452 bytes allocated ==40935== ==40935== LEAK SUMMARY: ==40935== definitely lost: 0 bytes in 0 blocks ==40935== indirectly lost: 0 bytes in 0 blocks ==40935== possibly lost: 0 bytes in 0 blocks ==40935== still reachable: 56 bytes in 3 blocks ==40935== suppressed: 35,159 bytes in 287 blocks ==40935== Reachable blocks (those to which a pointer was found) are not shown. ==40935== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40935== ==40935== For lists of detected and suppressed errors, rerun with: -s ==40935== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)