==40297== Memcheck, a memory error detector ==40297== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40297== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40297== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40297== Parent PID: 24181 ==40297== ==40297== ==40297== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40297== Open file descriptor 12: ==40297== at 0xFEA20FD: pipe (pipe.c:29) ==40297== by 0x199BC07D: ??? ==40297== by 0x12DFA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40297== by 0x103FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40297== by 0x10396D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40297== by 0x10586D38: PetscInitialize (pinit.c:924) ==40297== by 0xF7A2E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40297== by 0xF7A2EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40297== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40297== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40297== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40297== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40297== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40297== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40297== ==40297== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40297== at 0xFEA6A9C: __open_nocancel (open64_nocancel.c:39) ==40297== by 0xFE2ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40297== by 0xF7E0822: ??? ==40297== by 0xF7E096F: ??? ==40297== by 0x12E9F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40297== by 0x12E9F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40297== by 0x12E55922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40297== by 0x12DFA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40297== by 0x103FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40297== by 0x10396D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40297== by 0x10586D38: PetscInitialize (pinit.c:924) ==40297== by 0xF7A2E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40297== by 0xF7A2EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40297== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40297== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40297== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40297== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40297== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40297== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40297== ==40297== Open file descriptor 145: ==40297== ==40297== ==40297== Open file descriptor 142: ==40297== ==40297== ==40297== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==40297== ==40297== ==40297== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40297== ==40297== ==40297== ==40297== HEAP SUMMARY: ==40297== in use at exit: 35,126 bytes in 286 blocks ==40297== total heap usage: 2,078,072 allocs, 2,077,786 frees, 378,007,458 bytes allocated ==40297== ==40297== LEAK SUMMARY: ==40297== definitely lost: 0 bytes in 0 blocks ==40297== indirectly lost: 0 bytes in 0 blocks ==40297== possibly lost: 0 bytes in 0 blocks ==40297== still reachable: 56 bytes in 3 blocks ==40297== suppressed: 35,070 bytes in 283 blocks ==40297== Reachable blocks (those to which a pointer was found) are not shown. ==40297== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40297== ==40297== For lists of detected and suppressed errors, rerun with: -s ==40297== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)