==40380== Memcheck, a memory error detector ==40380== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40380== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40380== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40380== Parent PID: 24181 ==40380== ==40380== ==40380== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40380== Open file descriptor 12: ==40380== at 0x10C970FD: pipe (pipe.c:29) ==40380== by 0x1B6B907D: ??? ==40380== by 0x158094CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40380== by 0x1059F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40380== by 0x10538D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40380== by 0x62B4D38: PetscInitialize (pinit.c:924) ==40380== by 0x10481E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40380== by 0x10481EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40380== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40380== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40380== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40380== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40380== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40380== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40380== ==40380== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40380== at 0x10C9BA9C: __open_nocancel (open64_nocancel.c:39) ==40380== by 0x10C1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40380== by 0x615F822: ??? ==40380== by 0x615F96F: ??? ==40380== by 0x158AE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40380== by 0x158AE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40380== by 0x15864922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40380== by 0x158092DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40380== by 0x1059F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40380== by 0x10538D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40380== by 0x62B4D38: PetscInitialize (pinit.c:924) ==40380== by 0x10481E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40380== by 0x10481EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40380== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40380== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40380== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40380== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40380== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40380== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40380== ==40380== Open file descriptor 145: ==40380== ==40380== ==40380== Open file descriptor 142: ==40380== ==40380== ==40380== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40380== ==40380== ==40380== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40380== ==40380== ==40380== ==40380== HEAP SUMMARY: ==40380== in use at exit: 35,279 bytes in 291 blocks ==40380== total heap usage: 738,763 allocs, 738,472 frees, 41,711,618 bytes allocated ==40380== ==40380== LEAK SUMMARY: ==40380== definitely lost: 0 bytes in 0 blocks ==40380== indirectly lost: 0 bytes in 0 blocks ==40380== possibly lost: 0 bytes in 0 blocks ==40380== still reachable: 120 bytes in 4 blocks ==40380== suppressed: 35,159 bytes in 287 blocks ==40380== Reachable blocks (those to which a pointer was found) are not shown. ==40380== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40380== ==40380== For lists of detected and suppressed errors, rerun with: -s ==40380== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)