==40585== Memcheck, a memory error detector ==40585== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40585== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40585== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==40585== Parent PID: 24181 ==40585== ==40585== ==40585== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40585== Open file descriptor 12: ==40585== at 0x128B90FD: pipe (pipe.c:29) ==40585== by 0x1B6BA07D: ??? ==40585== by 0x168724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40585== by 0x121C1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40585== by 0x1215AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40585== by 0x624DD38: PetscInitialize (pinit.c:924) ==40585== by 0x12080E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40585== by 0x12080EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40585== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40585== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40585== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40585== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40585== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40585== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40585== ==40585== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40585== at 0x128BDA9C: __open_nocancel (open64_nocancel.c:39) ==40585== by 0x12841BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40585== by 0x120BE822: ??? ==40585== by 0x120BE96F: ??? ==40585== by 0x169176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40585== by 0x16917938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40585== by 0x168CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40585== by 0x168722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40585== by 0x121C1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40585== by 0x1215AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40585== by 0x624DD38: PetscInitialize (pinit.c:924) ==40585== by 0x12080E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40585== by 0x12080EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40585== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40585== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40585== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40585== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40585== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40585== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40585== ==40585== Open file descriptor 145: ==40585== ==40585== ==40585== Open file descriptor 142: ==40585== ==40585== ==40585== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==40585== ==40585== ==40585== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40585== ==40585== ==40585== ==40585== HEAP SUMMARY: ==40585== in use at exit: 35,295 bytes in 291 blocks ==40585== total heap usage: 37,925 allocs, 37,634 frees, 7,893,409 bytes allocated ==40585== ==40585== LEAK SUMMARY: ==40585== definitely lost: 0 bytes in 0 blocks ==40585== indirectly lost: 0 bytes in 0 blocks ==40585== possibly lost: 0 bytes in 0 blocks ==40585== still reachable: 136 bytes in 4 blocks ==40585== suppressed: 35,159 bytes in 287 blocks ==40585== Reachable blocks (those to which a pointer was found) are not shown. ==40585== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40585== ==40585== For lists of detected and suppressed errors, rerun with: -s ==40585== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)