==27693== Memcheck, a memory error detector ==27693== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27693== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27693== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==27693== Parent PID: 24914 ==27693== ==27693== ==27693== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27693== Open file descriptor 12: ==27693== at 0xFBEC0FD: pipe (pipe.c:29) ==27693== by 0x199BE07D: ??? ==27693== by 0x12E324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27693== by 0x104E6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27693== by 0x1047FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27693== by 0x1066DD38: PetscInitialize (pinit.c:924) ==27693== by 0xF405E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27693== by 0xF405EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27693== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27693== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27693== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27693== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27693== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27693== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==27693== ==27693== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27693== at 0xFBF0A9C: __open_nocancel (open64_nocancel.c:39) ==27693== by 0xFB74BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27693== by 0xF443822: ??? ==27693== by 0xF44396F: ??? ==27693== by 0x12ED76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27693== by 0x12ED7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27693== by 0x12E8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27693== by 0x12E322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27693== by 0x104E6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27693== by 0x1047FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27693== by 0x1066DD38: PetscInitialize (pinit.c:924) ==27693== by 0xF405E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27693== by 0xF405EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27693== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27693== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27693== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27693== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27693== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27693== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==27693== ==27693== Open file descriptor 145: ==27693== ==27693== ==27693== Open file descriptor 142: ==27693== ==27693== ==27693== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==27693== ==27693== ==27693== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27693== ==27693== ==27693== ==27693== HEAP SUMMARY: ==27693== in use at exit: 35,126 bytes in 286 blocks ==27693== total heap usage: 7,110,992 allocs, 7,110,706 frees, 7,708,882,662 bytes allocated ==27693== ==27693== LEAK SUMMARY: ==27693== definitely lost: 0 bytes in 0 blocks ==27693== indirectly lost: 0 bytes in 0 blocks ==27693== possibly lost: 0 bytes in 0 blocks ==27693== still reachable: 56 bytes in 3 blocks ==27693== suppressed: 35,070 bytes in 283 blocks ==27693== Reachable blocks (those to which a pointer was found) are not shown. ==27693== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27693== ==27693== For lists of detected and suppressed errors, rerun with: -s ==27693== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)