==41054== Memcheck, a memory error detector ==41054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41054== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41054== Parent PID: 24914 ==41054== ==41054== ==41054== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41054== Open file descriptor 12: ==41054== at 0xDEA10FD: pipe (pipe.c:29) ==41054== by 0x199BB07D: ??? ==41054== by 0x12E8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41054== by 0x103FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41054== by 0x10396D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41054== by 0x10586D38: PetscInitialize (pinit.c:924) ==41054== by 0xD79FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41054== by 0xD79FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41054== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41054== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41054== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41054== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41054== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41054== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==41054== ==41054== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41054== at 0xDEA5A9C: __open_nocancel (open64_nocancel.c:39) ==41054== by 0xDE29BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41054== by 0xD7DD822: ??? ==41054== by 0xD7DD96F: ??? ==41054== by 0x12F306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41054== by 0x12F30938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41054== by 0x12EE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41054== by 0x12E8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41054== by 0x103FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41054== by 0x10396D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41054== by 0x10586D38: PetscInitialize (pinit.c:924) ==41054== by 0xD79FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41054== by 0xD79FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41054== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41054== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41054== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41054== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41054== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41054== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==41054== ==41054== Open file descriptor 145: ==41054== ==41054== ==41054== Open file descriptor 142: ==41054== ==41054== ==41054== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==41054== ==41054== ==41054== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41054== ==41054== ==41054== ==41054== HEAP SUMMARY: ==41054== in use at exit: 35,126 bytes in 286 blocks ==41054== total heap usage: 40,671,083 allocs, 40,670,797 frees, 2,499,245,999 bytes allocated ==41054== ==41054== LEAK SUMMARY: ==41054== definitely lost: 0 bytes in 0 blocks ==41054== indirectly lost: 0 bytes in 0 blocks ==41054== possibly lost: 0 bytes in 0 blocks ==41054== still reachable: 56 bytes in 3 blocks ==41054== suppressed: 35,070 bytes in 283 blocks ==41054== Reachable blocks (those to which a pointer was found) are not shown. ==41054== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41054== ==41054== For lists of detected and suppressed errors, rerun with: -s ==41054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)