==26543== Memcheck, a memory error detector ==26543== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26543== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26543== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info ==26543== Parent PID: 24528 ==26543== ==26543== ==26543== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26543== Open file descriptor 12: ==26543== at 0xFA390FD: pipe (pipe.c:29) ==26543== by 0x197C407D: ??? ==26543== by 0x12C324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26543== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26543== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26543== by 0x10476D38: PetscInitialize (pinit.c:924) ==26543== by 0xF20EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26543== by 0xF20EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26543== by 0x2E1B32: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26543== by 0x2D8459: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26543== by 0x2DCE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26543== by 0x2DCCC4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26543== by 0x2DD35B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26543== by 0x2D6875: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==26543== ==26543== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26543== at 0xFA3DA9C: __open_nocancel (open64_nocancel.c:39) ==26543== by 0xF9C1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26543== by 0xF24C822: ??? ==26543== by 0xF24C96F: ??? ==26543== by 0x12CD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26543== by 0x12CD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26543== by 0x12C8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26543== by 0x12C322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26543== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26543== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26543== by 0x10476D38: PetscInitialize (pinit.c:924) ==26543== by 0xF20EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26543== by 0xF20EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26543== by 0x2E1B32: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26543== by 0x2D8459: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26543== by 0x2DCE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26543== by 0x2DCCC4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26543== by 0x2DD35B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26543== by 0x2D6875: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==26543== ==26543== Open file descriptor 145: ==26543== ==26543== ==26543== Open file descriptor 142: ==26543== ==26543== ==26543== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt ==26543== ==26543== ==26543== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26543== ==26543== ==26543== ==26543== HEAP SUMMARY: ==26543== in use at exit: 35,199 bytes in 290 blocks ==26543== total heap usage: 95,744 allocs, 95,454 frees, 15,550,623 bytes allocated ==26543== ==26543== LEAK SUMMARY: ==26543== definitely lost: 0 bytes in 0 blocks ==26543== indirectly lost: 0 bytes in 0 blocks ==26543== possibly lost: 0 bytes in 0 blocks ==26543== still reachable: 56 bytes in 3 blocks ==26543== suppressed: 35,143 bytes in 287 blocks ==26543== Reachable blocks (those to which a pointer was found) are not shown. ==26543== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26543== ==26543== For lists of detected and suppressed errors, rerun with: -s ==26543== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)