==27506== Memcheck, a memory error detector ==27506== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27506== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27506== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27506== Parent PID: 24528 ==27506== ==27506== ==27506== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27506== Open file descriptor 12: ==27506== at 0xFDD60FD: pipe (pipe.c:29) ==27506== by 0x197C407D: ??? ==27506== by 0x12BFA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27506== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27506== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27506== by 0x10476D38: PetscInitialize (pinit.c:924) ==27506== by 0xF5ABE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27506== by 0xF5ABEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27506== by 0x222440: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27506== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27506== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27506== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27506== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27506== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27506== ==27506== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27506== at 0xFDDAA9C: __open_nocancel (open64_nocancel.c:39) ==27506== by 0xFD5EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27506== by 0xF5E9822: ??? ==27506== by 0xF5E996F: ??? ==27506== by 0x12CA16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27506== by 0x12CA1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27506== by 0x12C57922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27506== by 0x12BFA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27506== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27506== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27506== by 0x10476D38: PetscInitialize (pinit.c:924) ==27506== by 0xF5ABE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27506== by 0xF5ABEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27506== by 0x222440: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27506== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27506== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27506== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27506== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27506== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27506== ==27506== Open file descriptor 145: ==27506== ==27506== ==27506== Open file descriptor 142: ==27506== ==27506== ==27506== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27506== ==27506== ==27506== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27506== ==27506== ==27506== ==27506== HEAP SUMMARY: ==27506== in use at exit: 35,126 bytes in 286 blocks ==27506== total heap usage: 8,107,454 allocs, 8,107,168 frees, 1,365,086,855 bytes allocated ==27506== ==27506== LEAK SUMMARY: ==27506== definitely lost: 0 bytes in 0 blocks ==27506== indirectly lost: 0 bytes in 0 blocks ==27506== possibly lost: 0 bytes in 0 blocks ==27506== still reachable: 56 bytes in 3 blocks ==27506== suppressed: 35,070 bytes in 283 blocks ==27506== Reachable blocks (those to which a pointer was found) are not shown. ==27506== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27506== ==27506== For lists of detected and suppressed errors, rerun with: -s ==27506== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)