==27028== Memcheck, a memory error detector ==27028== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27028== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27028== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==27028== Parent PID: 24528 ==27028== ==27028== ==27028== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27028== Open file descriptor 12: ==27028== at 0xFA390FD: pipe (pipe.c:29) ==27028== by 0x197C407D: ??? ==27028== by 0x12C324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27028== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27028== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27028== by 0x10476D38: PetscInitialize (pinit.c:924) ==27028== by 0xF20EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27028== by 0xF20EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27028== by 0x3114A6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27028== by 0x307B79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27028== by 0x30BF80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27028== by 0x30BE20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27028== by 0x30C4B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27028== by 0x305F95: main (TestOffLatticeSimulation.cpp:19) ==27028== ==27028== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27028== at 0xFA3DA9C: __open_nocancel (open64_nocancel.c:39) ==27028== by 0xF9C1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27028== by 0xF24C822: ??? ==27028== by 0xF24C96F: ??? ==27028== by 0x12CD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27028== by 0x12CD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27028== by 0x12C8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27028== by 0x12C322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27028== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27028== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27028== by 0x10476D38: PetscInitialize (pinit.c:924) ==27028== by 0xF20EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27028== by 0xF20EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27028== by 0x3114A6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27028== by 0x307B79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27028== by 0x30BF80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27028== by 0x30BE20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27028== by 0x30C4B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27028== by 0x305F95: main (TestOffLatticeSimulation.cpp:19) ==27028== ==27028== Open file descriptor 145: ==27028== ==27028== ==27028== Open file descriptor 142: ==27028== ==27028== ==27028== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==27028== ==27028== ==27028== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27028== ==27028== ==27028== ==27028== HEAP SUMMARY: ==27028== in use at exit: 35,126 bytes in 286 blocks ==27028== total heap usage: 12,373,137 allocs, 12,372,851 frees, 2,774,755,392 bytes allocated ==27028== ==27028== LEAK SUMMARY: ==27028== definitely lost: 0 bytes in 0 blocks ==27028== indirectly lost: 0 bytes in 0 blocks ==27028== possibly lost: 0 bytes in 0 blocks ==27028== still reachable: 56 bytes in 3 blocks ==27028== suppressed: 35,070 bytes in 283 blocks ==27028== Reachable blocks (those to which a pointer was found) are not shown. ==27028== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27028== ==27028== For lists of detected and suppressed errors, rerun with: -s ==27028== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)