==40638== Memcheck, a memory error detector ==40638== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40638== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40638== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40638== Parent PID: 24528 ==40638== ==40638== ==40638== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40638== Open file descriptor 12: ==40638== at 0xDCAA0FD: pipe (pipe.c:29) ==40638== by 0x197C507D: ??? ==40638== by 0x12C8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40638== by 0x10206418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40638== by 0x1019FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40638== by 0x1038FD38: PetscInitialize (pinit.c:924) ==40638== by 0xD5A8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40638== by 0xD5A8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40638== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40638== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40638== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40638== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40638== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40638== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40638== ==40638== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40638== at 0xDCAEA9C: __open_nocancel (open64_nocancel.c:39) ==40638== by 0xDC32BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40638== by 0xD5E6822: ??? ==40638== by 0xD5E696F: ??? ==40638== by 0x12D306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40638== by 0x12D30938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40638== by 0x12CE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40638== by 0x12C8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40638== by 0x10206418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40638== by 0x1019FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40638== by 0x1038FD38: PetscInitialize (pinit.c:924) ==40638== by 0xD5A8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40638== by 0xD5A8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40638== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40638== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40638== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40638== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40638== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40638== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40638== ==40638== Open file descriptor 145: ==40638== ==40638== ==40638== Open file descriptor 142: ==40638== ==40638== ==40638== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==40638== ==40638== ==40638== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40638== ==40638== ==40638== ==40638== HEAP SUMMARY: ==40638== in use at exit: 35,126 bytes in 286 blocks ==40638== total heap usage: 40,670,910 allocs, 40,670,624 frees, 2,499,234,600 bytes allocated ==40638== ==40638== LEAK SUMMARY: ==40638== definitely lost: 0 bytes in 0 blocks ==40638== indirectly lost: 0 bytes in 0 blocks ==40638== possibly lost: 0 bytes in 0 blocks ==40638== still reachable: 56 bytes in 3 blocks ==40638== suppressed: 35,070 bytes in 283 blocks ==40638== Reachable blocks (those to which a pointer was found) are not shown. ==40638== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40638== ==40638== For lists of detected and suppressed errors, rerun with: -s ==40638== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)