==40909== Memcheck, a memory error detector ==40909== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40909== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40909== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info ==40909== Parent PID: 24629 ==40909== ==40909== ==40909== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40909== Open file descriptor 12: ==40909== at 0x126780FD: pipe (pipe.c:29) ==40909== by 0x1B39207D: ??? ==40909== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40909== by 0x11E99418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40909== by 0x11E32D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40909== by 0x6210D38: PetscInitialize (pinit.c:924) ==40909== by 0x11D58E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40909== by 0x11D58EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40909== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40909== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40909== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40909== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40909== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40909== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) ==40909== ==40909== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40909== at 0x1267CA9C: __open_nocancel (open64_nocancel.c:39) ==40909== by 0x12600BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40909== by 0x11D96822: ??? ==40909== by 0x11D9696F: ??? ==40909== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40909== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40909== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40909== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40909== by 0x11E99418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40909== by 0x11E32D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40909== by 0x6210D38: PetscInitialize (pinit.c:924) ==40909== by 0x11D58E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40909== by 0x11D58EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40909== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40909== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40909== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40909== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40909== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40909== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) ==40909== ==40909== Open file descriptor 145: ==40909== ==40909== ==40909== Open file descriptor 142: ==40909== ==40909== ==40909== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt ==40909== ==40909== ==40909== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40909== ==40909== ==40909== ==40909== HEAP SUMMARY: ==40909== in use at exit: 35,215 bytes in 290 blocks ==40909== total heap usage: 1,389,295 allocs, 1,389,005 frees, 124,370,525 bytes allocated ==40909== ==40909== LEAK SUMMARY: ==40909== definitely lost: 0 bytes in 0 blocks ==40909== indirectly lost: 0 bytes in 0 blocks ==40909== possibly lost: 0 bytes in 0 blocks ==40909== still reachable: 56 bytes in 3 blocks ==40909== suppressed: 35,159 bytes in 287 blocks ==40909== Reachable blocks (those to which a pointer was found) are not shown. ==40909== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40909== ==40909== For lists of detected and suppressed errors, rerun with: -s ==40909== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)