==27189== Memcheck, a memory error detector ==27189== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27189== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27189== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27189== Parent PID: 24629 ==27189== ==27189== ==27189== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27189== Open file descriptor 12: ==27189== at 0xF9450FD: pipe (pipe.c:29) ==27189== by 0x196D007D: ??? ==27189== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27189== by 0x1023D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27189== by 0x101D6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27189== by 0x10382D38: PetscInitialize (pinit.c:924) ==27189== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27189== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27189== by 0x213584: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27189== by 0x20AE59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27189== by 0x20EAA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27189== by 0x20E948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27189== by 0x20EFDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27189== by 0x209275: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==27189== ==27189== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27189== at 0xF949A9C: __open_nocancel (open64_nocancel.c:39) ==27189== by 0xF8CDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27189== by 0xF158822: ??? ==27189== by 0xF15896F: ??? ==27189== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27189== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27189== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27189== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27189== by 0x1023D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27189== by 0x101D6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27189== by 0x10382D38: PetscInitialize (pinit.c:924) ==27189== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27189== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27189== by 0x213584: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27189== by 0x20AE59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27189== by 0x20EAA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27189== by 0x20E948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27189== by 0x20EFDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27189== by 0x209275: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==27189== ==27189== Open file descriptor 145: ==27189== ==27189== ==27189== Open file descriptor 142: ==27189== ==27189== ==27189== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt ==27189== ==27189== ==27189== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27189== ==27189== ==27189== ==27189== HEAP SUMMARY: ==27189== in use at exit: 35,158 bytes in 287 blocks ==27189== total heap usage: 18,260,616 allocs, 18,260,329 frees, 28,716,371,847 bytes allocated ==27189== ==27189== LEAK SUMMARY: ==27189== definitely lost: 0 bytes in 0 blocks ==27189== indirectly lost: 0 bytes in 0 blocks ==27189== possibly lost: 0 bytes in 0 blocks ==27189== still reachable: 88 bytes in 4 blocks ==27189== suppressed: 35,070 bytes in 283 blocks ==27189== Reachable blocks (those to which a pointer was found) are not shown. ==27189== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27189== ==27189== For lists of detected and suppressed errors, rerun with: -s ==27189== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)