==39979== Memcheck, a memory error detector ==39979== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39979== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39979== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info ==39979== Parent PID: 24047 ==39979== ==39979== ==39979== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39979== Open file descriptor 12: ==39979== at 0xF4760FD: pipe (pipe.c:29) ==39979== by 0x1B39307D: ??? ==39979== by 0x143C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39979== by 0x11AFD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39979== by 0x11A96D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39979== by 0x11C42D38: PetscInitialize (pinit.c:924) ==39979== by 0xED76E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39979== by 0xED76EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39979== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39979== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39979== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39979== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39979== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39979== by 0x118975: main (TestCellForCrypt.cpp:18) ==39979== ==39979== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39979== at 0xF47AA9C: __open_nocancel (open64_nocancel.c:39) ==39979== by 0xF3FEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39979== by 0xEDB4822: ??? ==39979== by 0xEDB496F: ??? ==39979== by 0x1446D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39979== by 0x1446D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39979== by 0x14423922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39979== by 0x143C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39979== by 0x11AFD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39979== by 0x11A96D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39979== by 0x11C42D38: PetscInitialize (pinit.c:924) ==39979== by 0xED76E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39979== by 0xED76EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39979== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39979== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39979== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39979== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39979== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39979== by 0x118975: main (TestCellForCrypt.cpp:18) ==39979== ==39979== Open file descriptor 145: ==39979== ==39979== ==39979== Open file descriptor 142: ==39979== ==39979== ==39979== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt ==39979== ==39979== ==39979== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39979== ==39979== ==39979== ==39979== HEAP SUMMARY: ==39979== in use at exit: 36,813 bytes in 312 blocks ==39979== total heap usage: 39,518 allocs, 39,206 frees, 8,150,677 bytes allocated ==39979== ==39979== LEAK SUMMARY: ==39979== definitely lost: 0 bytes in 0 blocks ==39979== indirectly lost: 0 bytes in 0 blocks ==39979== possibly lost: 0 bytes in 0 blocks ==39979== still reachable: 184 bytes in 4 blocks ==39979== suppressed: 36,629 bytes in 308 blocks ==39979== Reachable blocks (those to which a pointer was found) are not shown. ==39979== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39979== ==39979== For lists of detected and suppressed errors, rerun with: -s ==39979== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)