==28310== Memcheck, a memory error detector ==28310== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==28310== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==28310== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==28310== Parent PID: 24047 ==28310== ==28310== ==28310== FILE DESCRIPTORS: 9 open (3 std) at exit. ==28310== Open file descriptor 12: ==28310== at 0xFCA00FD: pipe (pipe.c:29) ==28310== by 0x196D007D: ??? ==28310== by 0x12B294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28310== by 0x101FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28310== by 0x10194D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28310== by 0x10382D38: PetscInitialize (pinit.c:924) ==28310== by 0xF4B7E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28310== by 0xF4B7EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28310== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28310== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28310== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28310== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28310== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28310== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==28310== ==28310== Open file descriptor 8: /dev/shm/open_mpi.0000 ==28310== at 0xFCA4A9C: __open_nocancel (open64_nocancel.c:39) ==28310== by 0xFC28BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==28310== by 0xF4F5822: ??? ==28310== by 0xF4F596F: ??? ==28310== by 0x12BCE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28310== by 0x12BCE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28310== by 0x12B84922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28310== by 0x12B292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28310== by 0x101FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28310== by 0x10194D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28310== by 0x10382D38: PetscInitialize (pinit.c:924) ==28310== by 0xF4B7E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28310== by 0xF4B7EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28310== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28310== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28310== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28310== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28310== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28310== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==28310== ==28310== Open file descriptor 145: ==28310== ==28310== ==28310== Open file descriptor 142: ==28310== ==28310== ==28310== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==28310== ==28310== ==28310== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==28310== ==28310== ==28310== ==28310== HEAP SUMMARY: ==28310== in use at exit: 36,669 bytes in 311 blocks ==28310== total heap usage: 2,387,514 allocs, 2,387,203 frees, 463,504,934 bytes allocated ==28310== ==28310== LEAK SUMMARY: ==28310== definitely lost: 0 bytes in 0 blocks ==28310== indirectly lost: 0 bytes in 0 blocks ==28310== possibly lost: 0 bytes in 0 blocks ==28310== still reachable: 56 bytes in 3 blocks ==28310== suppressed: 36,613 bytes in 308 blocks ==28310== Reachable blocks (those to which a pointer was found) are not shown. ==28310== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==28310== ==28310== For lists of detected and suppressed errors, rerun with: -s ==28310== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)